Detail information of GWHGAAZE017284


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_010654465.10PREDICTED: uncharacterized protein LOC100263481 isoform X6 [Vitis vinifera]
Swissprottr|Q9M347|TRP6_ARATH3E-11Telomere repeat-binding protein 6
trEMBLtr|F6HXY2|F6HXY2_VITVI0Putative uncharacterized protein {ECO:0000313|EMBL:CCB59305.1}
TAIR10AT1G72650.13E-93TRF-like 6

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000005gene38076193815860-
GWHAAZE00000005mRNA38076193815860-
GWHAAZE00000005exon38076193807789-
GWHAAZE00000005exon38089053808961-
GWHAAZE00000005exon38093093809599-
GWHAAZE00000005exon38103553810492-
GWHAAZE00000005exon38124413813256-
GWHAAZE00000005exon38133913813497-
GWHAAZE00000005exon38143883814562-
GWHAAZE00000005exon38157323815860-
GWHAAZE00000005CDS38157323815860-
GWHAAZE00000005CDS38143883814562-
GWHAAZE00000005CDS38133913813497-
GWHAAZE00000005CDS38124413813256-
GWHAAZE00000005CDS38103553810492-
GWHAAZE00000005CDS38093093809599-
GWHAAZE00000005CDS38089053808961-
GWHAAZE00000005CDS38076193807789-
Transcript Sequence

Network for GWHGAAZE017284

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00249.32Myb_DNA-binding5105591.10E-07
Protein Sequence

Gene family

Gene familysubfamily
Transcription Factors FamilyMYB-related

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName
GO:0003677molecular_functionDNA binding

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf28.352
SRR3591706second leaf23.701
SRR3591707mature leaf33.693
SRR3591708Shoot apex30.342
SRR3591709Stem41.935
SRR3591710White floral bud34.199
SRR3591711White flower34.492
SRR3591712Green floral bud24.718
SRR3591713Yellow flower33.427
SRP173429 SRR8316895Juvenile bud stage 18.760
SRR8316896Juvenile bud stage 24.151
SRR8316897Juvenile bud stage 11.522
SRR8316894Third green stage 8.212
SRR8316900Third green stage 19.186
SRR8316901Third green stage 19.563
SRR8316898Complete white stage 11.136
SRR8316899Complete white stage 30.239
SRR8316903Complete white stage 17.068
SRR8316902Silver flowering stage10.776
SRR8316904Silver flowering stage15.761
SRR8316905Silver flowering stage6.549
SRR8316906Gold flowering stage 28.089
SRR8316907Gold flowering stage 24.302
SRR8316908Gold flowering stage 28.070
SRP132670SRR6706286Control12.865
SRR6706287Light intensity 50%13.564
SRR6706288Light intensity 20%12.096
CNP0000432CNS0095592Slightly white alabastrum(diploid) 118.055
CNS0095593Slightly white alabastrum(diploid) 214.964
CNS0095594Slightly white alabastrum(diploid) 312.749
CNS0095595Whole white alabastrum(diploid) 213.065
CNS0095596Whole white alabastrum(diploid) 39.410
CNS0095597Whole white alabastrum(diploid) 411.714
CNS0095598Silvery flower (diploied) 126.083
CNS0095599Silvery flower (diploied) 220.016
CNS0095600Silvery flower (diploied) 324.463
CNS0095601Golden flower (diploid) 126.292
CNS0095602Golden flower (diploid) 228.928
CNS0095603Golden flower (diploid) 328.754
CNS0095604Slightly white alabastrum(tetraploid) 117.859
CNS0095605Slightly white alabastrum(tetraploid) 214.490
CNS0095606Slightly white alabastrum(tetraploid) 332.582
CNS0095607Whole white alabastrum(tetraploid) 110.599
CNS0095608Whole white alabastrum(tetraploid) 29.033
CNS0095609Whole white alabastrum(tetraploid) 318.574
CNS0095610Silvery flower (tetraploid) 125.371
CNS0095611Silvery flower (tetraploid) 226.753
CNS0095612Silvery flower (tetraploid) 319.546
CNS0095613Golden flower (tetraploid) 121.584
CNS0095614Golden flower (tetraploid) 225.878
CNS0095615Golden flower (tetraploid) 324.942
CRA001975CRR073297Stem 126.810
CRR073298Stem 221.948
CRR073299Stem 322.436
CRR073300Leaf 123.542
CRR073301Leaf 220.276
CRR073302Leaf 314.491
CRR073303Juvenile bud 114.552
CRR073304Juvenile bud 210.920
CRR073305Juvenile bud 316.191
CRR073306Third green 19.774
CRR073307Third green 26.644
CRR073308Third green 310.042
CRR073309Second white 17.551
CRR073310Second white 212.519
CRR073311Second white 39.410
CRR073312Silver flowering 19.009
CRR073313Silver flowering 26.123
CRR073314Silver flowering 35.523
CRR073315Gold flowering 123.487
CRR073316Gold flowering 235.034
CRR073317Gold flowering 317.973
CRR073318Tawny withering 121.652
CRR073319Tawny withering 219.018
CRR073320Tawny withering 319.739