Gene detail

Detail information of GWHGAAZE017285

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_011040057.1	0	PREDICTED: developmentally-regulated G-protein 2 [Populus euphratica]
Swissprot	tr\|Q9CAI1\|DRG2_ARATH	0	Developmentally-regulated G-protein 2
trEMBL	tr\|B9GWB7\|B9GWB7_POPTR	0	Uncharacterized protein {ECO:0000313\|EMBL:EEE78230.1}
TAIR10	AT1G72660.3	1E-163	P-loop containing nucleoside triphosphate hydrolases superfamily protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000005	gene	3832389	3840075	+
GWHAAZE00000005	mRNA	3832389	3840075	+
GWHAAZE00000005	exon	3832389	3832458	+
GWHAAZE00000005	exon	3832738	3832805	+
GWHAAZE00000005	exon	3833031	3833171	+
GWHAAZE00000005	exon	3833878	3834012	+
GWHAAZE00000005	exon	3834218	3834274	+
GWHAAZE00000005	exon	3834548	3834637	+
GWHAAZE00000005	exon	3836323	3836451	+
GWHAAZE00000005	exon	3837106	3837225	+
GWHAAZE00000005	exon	3837935	3838156	+
GWHAAZE00000005	exon	3838972	3839085	+
GWHAAZE00000005	exon	3839209	3839379	+
GWHAAZE00000005	exon	3839977	3840075	+
GWHAAZE00000005	CDS	3832389	3832458	+
GWHAAZE00000005	CDS	3832738	3832805	+
GWHAAZE00000005	CDS	3833031	3833171	+
GWHAAZE00000005	CDS	3833878	3834012	+
GWHAAZE00000005	CDS	3834218	3834274	+
GWHAAZE00000005	CDS	3834548	3834637	+
GWHAAZE00000005	CDS	3836323	3836451	+
GWHAAZE00000005	CDS	3837106	3837225	+
GWHAAZE00000005	CDS	3837935	3838156	+
GWHAAZE00000005	CDS	3838972	3839085	+
GWHAAZE00000005	CDS	3839209	3839379	+
GWHAAZE00000005	CDS	3839977	3840075	+

Transcript Sequence
>GWHTAAZE017305 ATGGGGATCGTAGAAAGGATAAAAGAAATTGAAGCCGAGATGGCTCGAACCCAGAAAAATAAAGCCACAGAGTATCATCTAGGTCAGCTCAAGGCTAAGATAGCAAAGCTAAGAACACAACTATTGGAGCCTCCAAAGGGTTCTAGTGGAGCTGGAGAGGGTTTTGAAGTCACGAAATATGGTCACGGACGTGTTGCGCTAATAGGATTTCCAAGGTTTGCTGTCTATCACCTTGATATGTGTCTAATGACTCTTTCTAAAAGAAGAAATGGAATGTGTAAGCTGCATCATATGAGTTCACAACTCTTACCTGCATCCCTGGGATTATTCACTACAATGATACTAAAATCCAACTGCTTCGATCTTCCTGGAATTATTGAAGGTGCTTCTGAAGGCAAGGGTCGTGGTAGGCAGGTGATTGCTGTTTCAAAGTCATCAGACATTGTATTAATGGTTCTTGATGCATCAAAGTCACAGCCTCTAGGTTGTGGCCTTGGTTGTCCTGTGTCTTTATTTCTTCCCATTGGTTGCTCCAATGTTTTAAAAGGCATTCGAGGCAAGAGTGAAGGACATCGACAGATATTGACAAAAGAGCTGGAAGCTGTGGGCTTGCGCTTAAACAAGAGACCACCTCAAGTAATATCTCTTGCCATTAAATTCCTTCTTTCTGAAAGAGTTTTCACACGTCAGATATACTTCAAGAAGAAAAAAACTGGGGGTATCTCTTTCAATAGCACCTTACAATTGACTCATGTGGATGAGAAGCTTTGCTATCAAATTCTCCACGAATACAAAATTCACAACGCAGAGGTTTTATTCCGTGAGGATGCAACAGTGGATGATCTTATAGATGTTATCGAGGGAAACCGCAAATACATGAAGTGTTTATATGTCTACAACAAGATAGATGTTGTTGGTATTGATGATGTGGACAAATTAGCCCGTCAACCGAATTCCATTGTCATTAGCTGCAACTTAAAGGCAGGTTTTGCTCTCTTTAATTTTGGTTTGGGTATCCAACATGGTAATGCGCTGAATTTAGACAGACTGCTTGCAAGGATGTGGGAGGCAATGGGTCTTGTCAGAGTTTATACAAAGCCGCAGGGCCAGCAACCTGATTTCTCAGATCCTGTGGTTCTCTCCGCTGATAGAGGAGGCTGCACGGTTGAGGACTTCTGTAATCACATACACAGAAGCCTTGTGAAGGATGTGAAATATGTGTTGGTGTGGGGCACAAGTGCAAGGCACTACCCACAGCATTGCGGCCTTGCTCATGTTCTTCAGGATGAAGATGTTGTTCAGATTGTCAAGAAAAAGGAAAAGGAAGCAGGGGAAGGAAGAGGTCGGTTTAAATCGCACTCAACAGCCCCTTCTCGAATATCTGACAGAGAGAAGAAAGCTCCTTTGAAGACGTAA

Network for GWHGAAZE017285

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation
CFinderModule0103

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF16897.6	MMR_HSR1_Xtn	238	360	6.50E-36
PF02824.22	TGS	361	437	2.00E-24

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0005525	molecular_function	GTP binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	39.733
	SRR3591706	second leaf	27.110
	SRR3591707	mature leaf	24.546
	SRR3591708	Shoot apex	50.625
	SRR3591709	Stem	33.010
	SRR3591710	White floral bud	26.095
	SRR3591711	White flower	33.483
	SRR3591712	Green floral bud	34.707
	SRR3591713	Yellow flower	33.742
SRP173429	SRR8316895	Juvenile bud stage	33.642
	SRR8316896	Juvenile bud stage	46.577
	SRR8316897	Juvenile bud stage	21.221
	SRR8316894	Third green stage	17.678
	SRR8316900	Third green stage	48.667
	SRR8316901	Third green stage	43.203
	SRR8316898	Complete white stage	13.933
	SRR8316899	Complete white stage	58.928
	SRR8316903	Complete white stage	20.908
	SRR8316902	Silver flowering stage	14.639
	SRR8316904	Silver flowering stage	19.306
	SRR8316905	Silver flowering stage	8.832
	SRR8316906	Gold flowering stage	37.600
	SRR8316907	Gold flowering stage	37.594
	SRR8316908	Gold flowering stage	41.166
SRP132670	SRR6706286	Control	30.334
	SRR6706287	Light intensity 50%	31.266
	SRR6706288	Light intensity 20%	34.518
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	34.160
	CNS0095593	Slightly white alabastrum(diploid) 2	35.208
	CNS0095594	Slightly white alabastrum(diploid) 3	34.318
	CNS0095595	Whole white alabastrum(diploid) 2	35.632
	CNS0095596	Whole white alabastrum(diploid) 3	34.849
	CNS0095597	Whole white alabastrum(diploid) 4	30.378
	CNS0095598	Silvery flower (diploied) 1	35.228
	CNS0095599	Silvery flower (diploied) 2	32.023
	CNS0095600	Silvery flower (diploied) 3	34.381
	CNS0095601	Golden flower (diploid) 1	28.069
	CNS0095602	Golden flower (diploid) 2	34.432
	CNS0095603	Golden flower (diploid) 3	34.125
	CNS0095604	Slightly white alabastrum(tetraploid) 1	37.124
	CNS0095605	Slightly white alabastrum(tetraploid) 2	38.108
	CNS0095606	Slightly white alabastrum(tetraploid) 3	50.484
	CNS0095607	Whole white alabastrum(tetraploid) 1	24.192
	CNS0095608	Whole white alabastrum(tetraploid) 2	20.580
	CNS0095609	Whole white alabastrum(tetraploid) 3	38.157
	CNS0095610	Silvery flower (tetraploid) 1	42.337
	CNS0095611	Silvery flower (tetraploid) 2	37.339
	CNS0095612	Silvery flower (tetraploid) 3	26.293
	CNS0095613	Golden flower (tetraploid) 1	22.990
	CNS0095614	Golden flower (tetraploid) 2	37.004
	CNS0095615	Golden flower (tetraploid) 3	20.594
CRA001975	CRR073297	Stem 1	38.598
	CRR073298	Stem 2	42.212
	CRR073299	Stem 3	36.730
	CRR073300	Leaf 1	38.019
	CRR073301	Leaf 2	41.824
	CRR073302	Leaf 3	34.870
	CRR073303	Juvenile bud 1	38.993
	CRR073304	Juvenile bud 2	28.156
	CRR073305	Juvenile bud 3	38.782
	CRR073306	Third green 1	5.498
	CRR073307	Third green 2	6.816
	CRR073308	Third green 3	8.528
	CRR073309	Second white 1	9.060
	CRR073310	Second white 2	12.749
	CRR073311	Second white 3	11.637
	CRR073312	Silver flowering 1	7.627
	CRR073313	Silver flowering 2	7.108
	CRR073314	Silver flowering 3	4.573
	CRR073315	Gold flowering 1	19.885
	CRR073316	Gold flowering 2	27.120
	CRR073317	Gold flowering 3	14.282
	CRR073318	Tawny withering 1	39.133
	CRR073319	Tawny withering 2	38.343
	CRR073320	Tawny withering 3	45.705