Gene detail

Detail information of GWHGAAZE017289

Functional Annotation

Database	Orthologs	Annotation
Nr	KDP40719.1	hypothetical protein JCGZ_24718 [Jatropha curcas]
Swissprot	tr\|Q9FNA9\|PDAT1_ARATH	Phospholipid:diacylglycerol acyltransferase 1
trEMBL	tr\|A0A067L9I0\|A0A067L9I0_JATCU	Uncharacterized protein {ECO:0000313\|EMBL:KDP40719.1}
TAIR10	AT5G13640.1	phospholipid:diacylglycerol acyltransferase

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000005	gene	3910293	3917675	+
GWHAAZE00000005	mRNA	3910293	3917675	+
GWHAAZE00000005	exon	3910293	3910516	+
GWHAAZE00000005	exon	3912204	3912426	+
GWHAAZE00000005	exon	3914873	3915156	+
GWHAAZE00000005	exon	3916070	3916385	+
GWHAAZE00000005	exon	3916483	3916742	+
GWHAAZE00000005	exon	3917192	3917675	+
GWHAAZE00000005	CDS	3910293	3910516	+
GWHAAZE00000005	CDS	3912204	3912426	+
GWHAAZE00000005	CDS	3914873	3915156	+
GWHAAZE00000005	CDS	3916070	3916385	+
GWHAAZE00000005	CDS	3916483	3916742	+
GWHAAZE00000005	CDS	3917192	3917675	+

Transcript Sequence
>GWHTAAZE017309 ATGCCGGCGAGTTTTCCTCAGTACGTTACGGAGGCGATTACTGGACCGTTGCCGGATCCTCCCGGCGTCAAATTGCATAAAGAGGGGTTGAGAGTGAAGCATCCGGTGGTGTTTGTACCTGGAATTGTTACCGCTGGACTTGAGCTATGGGAGGGGCATCATTGTGCTGAAGGATTGTTTAGGAAGAGGCTTTGGGGCGGCACTTTTGGAGAAGTATATAAGAGGCCTTTATGCTGGGTGGAGCATATGTCACTGGACAACGAAACTGGGCTGGATCCTTCTGGTATAAGGGTGAGGCCTGTCAGTGGACTTGTTGCTGCAGACTACTTTGCTCCAGGATATTTTGTTTGGGCTGTTTTGATTGCTAACTTGGCTCGAATAGGGTATGAGGAGAAAACGATGTATATGGCATCATATGATTGGAGACTTTCATTTCAGAATACGGAGGTAAGGGATCAGACTTTAAGCCGAATTAAAAGTAATATAGAACTGATGGTTGCTACTAATGGTGGCAACAAGGCAGTTATTATTCCACATTCAATGGGTGTTTTGTACTTTATGCACTTCATGAAGTGGGTCGAGGCACCACCTCCAATGGGTGGTGGAGGTGGACCAGATTGGTGTGCTAGGCACATAAAGGCTGTGATGAATATTGGTGGACCATTTTTAGGTGTTCCAAAAGCTATATCTGGGCTTTTCTCCATTGAAGCCAGGGATATTGCAGTTGCCAGGGCCATTGCACCAGGTGTTTTGGATAAGGATTTATTTCGCTTTCAAACATTGCAACACATGATGAAGATGACCCGTACGTGGGATTCAACCATGTCAATGATACCAAAAGGTGGGGAGACAATTTGGGGTGGTATCAATTGGTCCCCTGAAGAAGGCTATTTCCCTGGTAAGAAAAGGCAAAGAAACAATGATACTCATGATGAGACTGGAAGTCTGGTTTCTCAGGCAAAACATGTTAATTATGGAAGAATTATATCGTTTGGGAAAGATGTAGCTGAAGCACAACCATCGGAATTTGAGAGAATTGAATTTAGGGGTGCTGTAAAGGGCAACAATATTGCAAATTCTACTTGTCGGGACGTGTGGACAGAGTACCATGAGATGGGATTTGGTGGTATCAAAGCTGTTGCAGAGTACAAGGTTTATACAGCTGGGGATATTTTGGATTTGCTTCACTTTGTTGCTCCAAAAATGTTGGCACGTGGTAGCGTTCATTTCTCGTATGGGATAGCTGACAATTTGGATGACCCAAAATACCAACACTACAAATATTGGTCGAACCCACTTGAGATGAAGTTGCCAAATGCTCCGGACATGGAGATCTATTCAATGTATGGAGTTGGAGTTCCAACGGAAAGAGCATATGTTTACAGGCTCACTCCTTCAGCAGAATGCTACATTCCATTTCAGATTGACACTACAGCAGATGGAGAAGGCGAAGACAGCTGTTTGAAAGACGGGGTTTTCACTGTAGATGGGGATGAGACCGTGCCCGTTTTAAGTTCAGGCTTCATGTGTGCTAAAGGTTGGCGGGGTAAAACCAGATTTAATCCCTCGGGAATTGGAACTTACATTAGGGAGTACGATCATGCTCCTCCAGCTAATTTTCTCGAGGGTCGTGGGACCCAGAGTGGTGCTCATGTGGATATAATGGGAAATTTTGCTTTGATCGAGGACATTATAAGGGTTGCAGCAGGGGCCACTGGAGAGGAGCTGGGTGGAGATCAAGTTCACTCAGACATCTTCAAGTGGTCAGAGAAGATCAAGCTGAGGCTGTAA

Network for GWHGAAZE017289

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF02450.16	LCAT	60	556	9.60E-61

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K00679	E2.3.1.158	Metabolic pathways	map01100
K00679	E2.3.1.158	Glycerolipid metabolism	map00561

Gene Ontology

GO term	Ontology	Name
GO:0006629	biological_process	lipid metabolic process
GO:0008374	molecular_function	O-acyltransferase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	83.023
	SRR3591706	second leaf	80.149
	SRR3591707	mature leaf	83.252
	SRR3591708	Shoot apex	83.074
	SRR3591709	Stem	76.883
	SRR3591710	White floral bud	52.892
	SRR3591711	White flower	34.268
	SRR3591712	Green floral bud	64.794
	SRR3591713	Yellow flower	23.157
SRP173429	SRR8316895	Juvenile bud stage	36.572
	SRR8316896	Juvenile bud stage	44.483
	SRR8316897	Juvenile bud stage	18.922
	SRR8316894	Third green stage	21.419
	SRR8316900	Third green stage	61.753
	SRR8316901	Third green stage	60.993
	SRR8316898	Complete white stage	13.277
	SRR8316899	Complete white stage	53.266
	SRR8316903	Complete white stage	25.210
	SRR8316902	Silver flowering stage	10.435
	SRR8316904	Silver flowering stage	18.233
	SRR8316905	Silver flowering stage	9.229
	SRR8316906	Gold flowering stage	25.486
	SRR8316907	Gold flowering stage	23.844
	SRR8316908	Gold flowering stage	17.997
SRP132670	SRR6706286	Control	53.925
	SRR6706287	Light intensity 50%	52.804
	SRR6706288	Light intensity 20%	52.796
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	48.851
	CNS0095593	Slightly white alabastrum(diploid) 2	48.877
	CNS0095594	Slightly white alabastrum(diploid) 3	49.882
	CNS0095595	Whole white alabastrum(diploid) 2	63.618
	CNS0095596	Whole white alabastrum(diploid) 3	67.635
	CNS0095597	Whole white alabastrum(diploid) 4	63.636
	CNS0095598	Silvery flower (diploied) 1	67.494
	CNS0095599	Silvery flower (diploied) 2	58.588
	CNS0095600	Silvery flower (diploied) 3	46.781
	CNS0095601	Golden flower (diploid) 1	60.240
	CNS0095602	Golden flower (diploid) 2	62.178
	CNS0095603	Golden flower (diploid) 3	60.556
	CNS0095604	Slightly white alabastrum(tetraploid) 1	74.612
	CNS0095605	Slightly white alabastrum(tetraploid) 2	68.847
	CNS0095606	Slightly white alabastrum(tetraploid) 3	88.830
	CNS0095607	Whole white alabastrum(tetraploid) 1	84.037
	CNS0095608	Whole white alabastrum(tetraploid) 2	84.688
	CNS0095609	Whole white alabastrum(tetraploid) 3	77.947
	CNS0095610	Silvery flower (tetraploid) 1	65.452
	CNS0095611	Silvery flower (tetraploid) 2	85.176
	CNS0095612	Silvery flower (tetraploid) 3	60.116
	CNS0095613	Golden flower (tetraploid) 1	33.619
	CNS0095614	Golden flower (tetraploid) 2	60.211
	CNS0095615	Golden flower (tetraploid) 3	38.863
CRA001975	CRR073297	Stem 1	46.370
	CRR073298	Stem 2	44.053
	CRR073299	Stem 3	43.989
	CRR073300	Leaf 1	55.633
	CRR073301	Leaf 2	40.766
	CRR073302	Leaf 3	40.795
	CRR073303	Juvenile bud 1	48.420
	CRR073304	Juvenile bud 2	36.345
	CRR073305	Juvenile bud 3	47.171
	CRR073306	Third green 1	17.847
	CRR073307	Third green 2	19.853
	CRR073308	Third green 3	20.333
	CRR073309	Second white 1	16.559
	CRR073310	Second white 2	17.303
	CRR073311	Second white 3	14.987
	CRR073312	Silver flowering 1	18.292
	CRR073313	Silver flowering 2	20.708
	CRR073314	Silver flowering 3	15.250
	CRR073315	Gold flowering 1	52.240
	CRR073316	Gold flowering 2	60.133
	CRR073317	Gold flowering 3	50.572
	CRR073318	Tawny withering 1	45.576
	CRR073319	Tawny withering 2	35.970
	CRR073320	Tawny withering 3	36.704