Gene detail

Detail information of GWHGAAZE017298

Functional Annotation

Database	Orthologs	Annotation
Nr	XP_010262239.1	PREDICTED: uncharacterized protein LOC104600806 [Nelumbo nucifera]
Swissprot	tr\|P41381\|IF4A8_TOBAC	Eukaryotic initiation factor 4A-8
trEMBL	tr\|A0A067FG88\|A0A067FG88_CITSI	Uncharacterized protein {ECO:0000313\|EMBL:KDO65150.1}
TAIR10	AT1G54270.1	eif4a-2

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000005	gene	4092569	4095878	+
GWHAAZE00000005	mRNA	4092569	4095878	+
GWHAAZE00000005	exon	4092569	4092725	+
GWHAAZE00000005	exon	4093827	4093902	+
GWHAAZE00000005	exon	4094049	4094155	+
GWHAAZE00000005	exon	4094506	4094936	+
GWHAAZE00000005	exon	4095243	4095878	+
GWHAAZE00000005	five_prime_UTR	4092569	4092725	+
GWHAAZE00000005	five_prime_UTR	4093827	4093834	+
GWHAAZE00000005	CDS	4093835	4093902	+
GWHAAZE00000005	CDS	4094049	4094155	+
GWHAAZE00000005	CDS	4094506	4094936	+
GWHAAZE00000005	CDS	4095243	4095878	+

Transcript Sequence
>GWHTAAZE017318 ATCGGAATATAAGTTTGGCAAAGGGCATAATCGAACTCTCATTTGTCCCCCATATTCTCAAAATTTCCATTCCTCTGTAACTCCACGGCGCAGATCCGAGGAGTTTGAAAACCCTAGCTCTACACCGATCATCTCCCTTATTTTTCATCGTTAACAGTCGTAGGTATGGCAGGTTTGGCACCAGAAGGATCACAATTTGATGCTCGCCAGTATGATGCTAAGATGAGTGACCTGCTCTCATCTGATGGACAAGAGTTCTTCACATCATATGATGAAGCTTTTGACAGTTTTGATGCTATGGGATTGCAAGAGAACCTCCTCAGGGGCATCTATGCTTATGGTTTTGAAAAGCCCTCTGCAATCCAGCAAAGGGGGATTGTTCCATTTTGCAAGGGACTTGATGTTATTCAGCAGGCACAATCTGGAACTGGGAAAACAGCAACCTTTTGCTCTGGAATCTTGCAGCAACTTGATTACGGCATAGTCCAGTGCCAAGCATTAGTTCTGGCACCCACTCGTGAACTTGCACAACAGATTGAGAAGGTTATGCGAGCACTTGGTGACTATCTTGGTGTGAAGGTCCATGCTTGTGTTGGGGGGACCAGTGTTCGTGAGGATCAGCGCATTCTTTCAAGTGGGGTTCATGTTGTTGTTGGCACCCCTGGTCGTGTGTTTGACATGCTGCGTAGACAGTCACTTCGCCCCGACTATATTAAGATGTTTGTATTGGATGAGGCAGATGAGATGCTTTCAAGAGGTTTTAAGGATCAGATCTATGACATTTTCCAGCTACTGCCAGCTAAAGTCCAGGTTGGAGTCTTCTCTGCCACAATGCCGCCTGAAGCCCTTGAGATCACTAGGAAGTTCATGAACAAGCCCGTGAGGATCTTGGTAAAACGCGATGAGCTAACACTCGAGGGTATCAAGCAGTTCTATGTGAACGTTGAAAAGGAAGACTGGAAGCTCGAAACACTTTGTGATCTCTACGAAACCCTAGCCATTACCCAGAGTGTCATCTTTGTCAACACCAGGCGCAAGGTTGACTGGCTCACTGACAAAATGCGAAGCCGGGACCACACTGTCTCTGCTACCCATGGTGACATGGACCAGAACACTCGCGATATTATCATGCGTGAATTTCGCTCTGGTTCTTCTCGGGTTCTTATAACGACTGATCTGTTGGCTCGTGGTATTGATGTGCAGCAAGTTTCACTTGTTATAAATTATGATTTGCCTACACAACCAGAAAATTACCTCCACCGTATTGGGCGAAGTGGGCGGTTTGGAAGAAAAGGTGTTGCCATAAATTTTGTGACGAACGATGACGAGAGAATGCTGTTTGATATTCAGAAGTTCTATAACGTGGTCGTGGAGGAACTGCCATCAAATGTTGCTGATCTCCTGTGA

Network for GWHGAAZE017298

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00270.30	DEAD	65	226	9.20E-40
PF00271.32	Helicase_C	266	374	6.90E-29

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K03257	EIF4A	RNA transport	map03013

Gene Ontology

GO term	Ontology	Name
GO:0003676	molecular_function	nucleic acid binding
GO:0005524	molecular_function	ATP binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	33.867
	SRR3591706	second leaf	18.778
	SRR3591707	mature leaf	16.903
	SRR3591708	Shoot apex	26.131
	SRR3591709	Stem	29.066
	SRR3591710	White floral bud	62.007
	SRR3591711	White flower	63.271
	SRR3591712	Green floral bud	56.904
	SRR3591713	Yellow flower	72.224
SRP173429	SRR8316895	Juvenile bud stage	33.231
	SRR8316896	Juvenile bud stage	54.085
	SRR8316897	Juvenile bud stage	22.176
	SRR8316894	Third green stage	19.328
	SRR8316900	Third green stage	61.104
	SRR8316901	Third green stage	54.925
	SRR8316898	Complete white stage	28.765
	SRR8316899	Complete white stage	58.310
	SRR8316903	Complete white stage	43.052
	SRR8316902	Silver flowering stage	21.481
	SRR8316904	Silver flowering stage	29.260
	SRR8316905	Silver flowering stage	13.415
	SRR8316906	Gold flowering stage	52.294
	SRR8316907	Gold flowering stage	41.279
	SRR8316908	Gold flowering stage	45.503
SRP132670	SRR6706286	Control	48.163
	SRR6706287	Light intensity 50%	49.294
	SRR6706288	Light intensity 20%	52.955
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	37.870
	CNS0095593	Slightly white alabastrum(diploid) 2	31.166
	CNS0095594	Slightly white alabastrum(diploid) 3	39.420
	CNS0095595	Whole white alabastrum(diploid) 2	29.866
	CNS0095596	Whole white alabastrum(diploid) 3	28.698
	CNS0095597	Whole white alabastrum(diploid) 4	23.472
	CNS0095598	Silvery flower (diploied) 1	27.713
	CNS0095599	Silvery flower (diploied) 2	29.201
	CNS0095600	Silvery flower (diploied) 3	61.623
	CNS0095601	Golden flower (diploid) 1	27.008
	CNS0095602	Golden flower (diploid) 2	55.645
	CNS0095603	Golden flower (diploid) 3	53.922
	CNS0095604	Slightly white alabastrum(tetraploid) 1	49.182
	CNS0095605	Slightly white alabastrum(tetraploid) 2	41.904
	CNS0095606	Slightly white alabastrum(tetraploid) 3	43.234
	CNS0095607	Whole white alabastrum(tetraploid) 1	42.959
	CNS0095608	Whole white alabastrum(tetraploid) 2	36.742
	CNS0095609	Whole white alabastrum(tetraploid) 3	54.656
	CNS0095610	Silvery flower (tetraploid) 1	51.464
	CNS0095611	Silvery flower (tetraploid) 2	47.502
	CNS0095612	Silvery flower (tetraploid) 3	56.305
	CNS0095613	Golden flower (tetraploid) 1	38.668
	CNS0095614	Golden flower (tetraploid) 2	50.902
	CNS0095615	Golden flower (tetraploid) 3	51.924
CRA001975	CRR073297	Stem 1	48.497
	CRR073298	Stem 2	43.562
	CRR073299	Stem 3	44.788
	CRR073300	Leaf 1	45.947
	CRR073301	Leaf 2	44.674
	CRR073302	Leaf 3	50.124
	CRR073303	Juvenile bud 1	49.727
	CRR073304	Juvenile bud 2	54.457
	CRR073305	Juvenile bud 3	53.740
	CRR073306	Third green 1	40.513
	CRR073307	Third green 2	42.591
	CRR073308	Third green 3	39.594
	CRR073309	Second white 1	53.772
	CRR073310	Second white 2	36.766
	CRR073311	Second white 3	38.898
	CRR073312	Silver flowering 1	52.057
	CRR073313	Silver flowering 2	73.018
	CRR073314	Silver flowering 3	48.509
	CRR073315	Gold flowering 1	17.856
	CRR073316	Gold flowering 2	21.359
	CRR073317	Gold flowering 3	25.225
	CRR073318	Tawny withering 1	37.459
	CRR073319	Tawny withering 2	33.676
	CRR073320	Tawny withering 3	36.807