Gene detail

Detail information of GWHGAAZE017300

Functional Annotation

Database	Orthologs	Annotation
Nr	CDO97890.1	unnamed protein product [Coffea canephora]
Swissprot	tr\|Q9LNQ4\|ALA4_ARATH	Putative phospholipid-transporting ATPase 4
trEMBL	tr\|A0A068TNH7\|A0A068TNH7_COFCA	Coffea canephora DH200=94 genomic scaffold, scaffold_2 {ECO:0000313\|EMBL:CDO97890.1}
TAIR10	AT1G17500.1	ATPase E1-E2 type family protein / haloacid dehalogenase-like hydrolase family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000005	gene	4135733	4141137	-
GWHAAZE00000005	mRNA	4135733	4141137	-
GWHAAZE00000005	exon	4135733	4136389	-
GWHAAZE00000005	exon	4136680	4136871	-
GWHAAZE00000005	exon	4136957	4137055	-
GWHAAZE00000005	exon	4137745	4137870	-
GWHAAZE00000005	exon	4138009	4138218	-
GWHAAZE00000005	exon	4138318	4138402	-
GWHAAZE00000005	exon	4138514	4138602	-
GWHAAZE00000005	exon	4138707	4138983	-
GWHAAZE00000005	exon	4139094	4139204	-
GWHAAZE00000005	exon	4139312	4141137	-
GWHAAZE00000005	CDS	4139312	4141137	-
GWHAAZE00000005	CDS	4139094	4139204	-
GWHAAZE00000005	CDS	4138707	4138983	-
GWHAAZE00000005	CDS	4138514	4138602	-
GWHAAZE00000005	CDS	4138318	4138402	-
GWHAAZE00000005	CDS	4138009	4138218	-
GWHAAZE00000005	CDS	4137745	4137870	-
GWHAAZE00000005	CDS	4136957	4137055	-
GWHAAZE00000005	CDS	4136680	4136871	-
GWHAAZE00000005	CDS	4135733	4136389	-

Transcript Sequence
>GWHTAAZE017320 ATGGCACACGGCAGAATAAGGGCGAAGCTCCGACGGAGCAATTTTTACACATTTGGATGTATGAGACCCCCTGCTAGTACAGAGGGTCCTCATCAATTCCAAGGTCCTGGGTATTCGCGAATGATATACTGCAACCAGCCTCGTCTCCACCAAAAGAAGCCTTTTAAATATTGCTCGAATTATATATCAACCACAAAGTACAATATTATAACGTTCATACCCAAGGCCGTTTTTGAGCAATTCCGCCGTGTTGCCAATGTGTACTTCCTCCTTGCTGCGATTCTTTCACTCACGCCTGTTACCCCATTCTCAGCTATTAGTATGATTGCTCCTCTGGCCTTTGTGGTGGGGCTTAGTATGGCAAAGGAAGCTTTGGAAGATTGGCGTAGATTTATACAGGATATGAAAGTTAATCTTCGAAAAGCTAACATTCATAAAGGGAACGGTGTGTTTTCTTATAAGCCATGGATGAAGATTCGCGTTGGAGATGTGGTTAAAGTGGAAAAGGATCAGTTTTTTCCTGCAGATTTACTTCTTCTTTCATCAAGTTATGATGACGGGATATGTTATGTGGAGACCATGAACTTAGATGGAGAAACAAACTTGAAGGTTAAAAGAGCTTTGGAGATAACCTTACCTTTAGAAGATGATGGAAGTTTCAAGGACTTCACAGGAACGATTAGATCTGAAGACCCCAACCCAAATCTTTACACTTTTGTGGGTAATCTTGAATATGACCGTCAGGTTTATCCTCTCGATCCTAGTCAGATTCTACTAAGAGATTCGAAGCTTAGGAATACGGGTTTTGTGTTTGGGGTTGTGATATTCACCGGTCACGATAGCAAAGTCATGCAGAATGCTACAAGGTCACCTTCAAAAAGGAGCAAGATCGAAAAACAGATGGACAAGATCATTTATGTTCTTTTCACCCTTCTCGTGTTGATCTCTGTGATCAGCTCGATTGGCTTTGCTGTGAAGACTAAGTTTCAAATGCCGGATTGGTGGTACTTGCCTGCTGACGAAGATGGTCTTTATGATCCGGAAAAGCCTGCTTTATCGGGCTTTTACCATCTAGTCACCGCTCTTATCCTCTATGGATACTTAATACCCATCTCTCTCTATGTTTCGATTGAGGTTGTGAAGGTCCTTCAAGCATTGTTCATTAACCAAGACATACACATGTATGATGAAGAGACCGGAACTCCAGCTCAAGCTCGAACATCGAATTTGAATGAAGAATTGGGACAAGTTGATACAATTCTCTCTGATAAAACGGGGACATTGACGTGTAACCAAATGGACTTTCTTAAATGTTCAATTGCTGGAACTGCATATGGAAGGTCTTCAAGTGAAGTAGAACTTGCTGCTGCACAGCAAATGGCGATGGACCTTGATGGGCAAGACCCCGATTTTACAAGCACTCCCATAAACAGAAATAGTGGAGATATTTCAAAGAAATACAGCCGAAATTTTTTTGGGAAATCAGAAATCGAAATGGAGACATTGAGTACACCTAAAGATGGGAATTATCAGAAACCTGCTATAAAGGGTTTTAGCTTTGAGGATAGTCGACTGATGAATGGAAATTGGTCGAATGAGCCGAATACAGATGTCGTTTTGTTGTTTCTTCGGATACTTGCACTTTGTCACACTGCAATCCCAGAGCTAAATGAGGAGACTGGTAGCTTTAATTATGAAGCCGAGTCACCAGATGAAGGAGCTTTTCTTGTTGCCGCTAGAGAATTCGGGTTTGAGTTTTGTAAAAGAACTCAAACAAGCATATTTGTCCGTGAGAAATATCATTCTTCCCAAGAACCTATAGAAAGGGAGTTTAAACTTCTCAATCTGTTGGATTTCACTAGCAAAAGAAAGCGAATGTCTGTTATTGTCCGTGATGAGGATGGACAGATTCTTCTCCTCTGCAAAGGTGCTGACAGCATCATATTTGATCGCTTATCAAAAAACGGTAGAATGTTTGAGGAAGCTACAACAAAGCATTTGAATGAGTATGGGGAAACTGGGCTTCGGACACTGGCCCTTGCTTTCCGCAAGTTAGAAGAAGATGAGTATTCTGCATGGAATAACGAGTTTATTAAAGCAAAGACCTCCATTGGCGGTGATAGAGAGGCAACGCTTGAACGATTGTCTGATCTAATGGAAAGGGAGTTAATCCTTGTGGGTGCGACTGCTGTGGAGGACAAACTGCAAAAAGGAGTGCCTCAGTGTATTGACAAACTTGCTCAAGCTGGTCTGAAGCTCTGGGTCCTCACTGGTGATAAGATGGAAACTGCAATAAACATAGGATTCGCATGTAGTCTGCTTCGACAGGGCATGAAGCAGATCTGTATAACAACGAATATAGATATGTTAGTCCAAGATTCCAAACAGGCTGCAAAGGAGAACATTATGATGCAAATTGCAAATGCATCTCAAATGGTTAAGCTCGAAAAGGACCCACATGCAGCATTTGCCTTAATTATTGATGGGAAAACACTAACTTATGTGTTGGAGGATGATTTGAAGCATCAATTCTTGAATTTAGCCGTTGATTGTGCATCTGTCATATGCTGTCGTGTCTCTCCTAAGCAGAAGGCTTTGGTAACAAGATTAGTGAAAGAAGGGACAGGGAAAACGACCTTAGCAATTGGTGATGGTGCAAATGATGTTGGAATGATTCAAGAAGCAGACATTGGTGTTGGCATTAGTGGGGTGGAAGGGATGCAGGCTGTGATGGCTAGTGACTTTTCTATTGCACAGTTTCGGTTTCTGGAGAGACTTCTAGTTGTCCATGGACACTGGTGCTATAAAAGAATCGCACAGATGATTTGCTATTTTTTCTACAAGAATATAGCTTTTGGGCTTACCCTCTTCTACTTTGAGGCATTCACGGGCTTTTCTGGGCAATCGGTTTATGACGATTGGTACATGCTTCTATTCAACGTTGTTCTCACCTCGTTGCCAGTCATTTCACTTGGAGTCTTTGAACAAGATGTTTCCTCTGATGTCTGCTTACAGTTTCCAGCACTGTATCAACAAGGACCAAGAAACTTGTTTTTCGACTGGCCAAGGATATTTGGGTGGATGGGAAATGGTCTCTACACCTCTCTCATTATCTTCTTCCTTAACATTATCATTTTTTACGACCAAGCCTTCCGTGCCGGGGGCCAGACTGCTGACATGGCGGCCGTGGGGACCACCATGTTCACTTGCATCATTTGGGCCGTCAATTGCCAGATTGCCCTCACGATGAGTCACTTCACATGGATACAACATTTTCTTGTGTGGGGCAGCATTGCCACTTGGTACCTATTTCTTTTACTCTACGGCCAGATTTCACCCGTTTTATCAGGGAACGCTTTTCAGATTCTTGTGGAAGCCCTTGCCCCGGCCCCGATATACTGGGTTTCAACCCTTTTAGTGACCGTGGCATGTAATTTACCGTACTTGGCCCATATATCTTTCCAAAGATCCATCAACCCAATGGATCACCATCTCATTCAAGAAATCAAGTACTACAAAAGAGACGTTGAGGATCGACATATGTGGACTAGAGAGCGGTCCAGAGCAAGACAAGAGACTAAAATTGGGTTCTCAGCTAGGGTAGATGCAAAGATTAGGCATTTGAGAGGAAGGTTGCAGAAGAAACATTCAGCCATGATGTCCCCAAGATAA

Network for GWHGAAZE017300

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation
CFinderModule0025

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF16209.6	PhoLip_ATPase_N	42	109	7.40E-24
PF13246.7	Cation_ATPase	548	653	1.70E-12
PF16212.6	PhoLip_ATPase_C	910	1160	7.70E-87

Protein Sequence

>GWHPAAZE017310
MAHGRIRAKLRRSNFYTFGCMRPPASTEGPHQFQGPGYSRMIYCNQPRLHQKKPFKYCSNYISTTKYNIITFIPKAVFEQFRRVANVYFLLAAILSLTPVTPFSAISMIAPLAFVVGLSMAKEALEDWRRFIQDMKVNLRKANIHKGNGVFSYKPWMKIRVGDVVKVEKDQFFPADLLLLSSSYDDGICYVETMNLDGETNLKVKRALEITLPLEDDGSFKDFTGTIRSEDPNPNLYTFVGNLEYDRQVYPLDPSQILLRDSKLRNTGFVFGVVIFTGHDSKVMQNATRSPSKRSKIEKQMDKIIYVLFTLLVLISVISSIGFAVKTKFQMPDWWYLPADEDGLYDPEKPALSGFYHLVTALILYGYLIPISLYVSIEVVKVLQALFINQDIHMYDEETGTPAQARTSNLNEELGQVDTILSDKTGTLTCNQMDFLKCSIAGTAYGRSSSEVELAAAQQMAMDLDGQDPDFTSTPINRNSGDISKKYSRNFFGKSEIEMETLSTPKDGNYQKPAIKGFSFEDSRLMNGNWSNEPNTDVVLLFLRILALCHTAIPELNEETGSFNYEAESPDEGAFLVAAREFGFEFCKRTQTSIFVREKYHSSQEPIEREFKLLNLLDFTSKRKRMSVIVRDEDGQILLLCKGADSIIFDRLSKNGRMFEEATTKHLNEYGETGLRTLALAFRKLEEDEYSAWNNEFIKAKTSIGGDREATLERLSDLMERELILVGATAVEDKLQKGVPQCIDKLAQAGLKLWVLTGDKMETAINIGFACSLLRQGMKQICITTNIDMLVQDSKQAAKENIMMQIANASQMVKLEKDPHAAFALIIDGKTLTYVLEDDLKHQFLNLAVDCASVICCRVSPKQKALVTRLVKEGTGKTTLAIGDGANDVGMIQEADIGVGISGVEGMQAVMASDFSIAQFRFLERLLVVHGHWCYKRIAQMICYFFYKNIAFGLTLFYFEAFTGFSGQSVYDDWYMLLFNVVLTSLPVISLGVFEQDVSSDVCLQFPALYQQGPRNLFFDWPRIFGWMGNGLYTSLIIFFLNIIIFYDQAFRAGGQTADMAAVGTTMFTCIIWAVNCQIALTMSHFTWIQHFLVWGSIATWYLFLLLYGQISPVLSGNAFQILVEALAPAPIYWVSTLLVTVACNLPYLAHISFQRSINPMDHHLIQEIKYYKRDVEDRHMWTRERSRARQETKIGFSARVDAKIRHLRGRLQKKHSAMMSPR

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0015914	biological_process	phospholipid transport
GO:0016021	cellular_component	integral component of membrane
GO:0000166	molecular_function	nucleotide binding
GO:0000287	molecular_function	magnesium ion binding
GO:0005524	molecular_function	ATP binding
GO:0140326	molecular_function	ATPase-coupled intramembrane lipid transporter activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	16.118
	SRR3591706	second leaf	8.044
	SRR3591707	mature leaf	9.363
	SRR3591708	Shoot apex	13.046
	SRR3591709	Stem	14.870
	SRR3591710	White floral bud	15.431
	SRR3591711	White flower	19.171
	SRR3591712	Green floral bud	14.780
	SRR3591713	Yellow flower	12.108
SRP173429	SRR8316895	Juvenile bud stage	9.031
	SRR8316896	Juvenile bud stage	12.175
	SRR8316897	Juvenile bud stage	6.078
	SRR8316894	Third green stage	4.827
	SRR8316900	Third green stage	10.050
	SRR8316901	Third green stage	11.769
	SRR8316898	Complete white stage	3.033
	SRR8316899	Complete white stage	21.306
	SRR8316903	Complete white stage	6.346
	SRR8316902	Silver flowering stage	6.502
	SRR8316904	Silver flowering stage	6.006
	SRR8316905	Silver flowering stage	2.643
	SRR8316906	Gold flowering stage	7.917
	SRR8316907	Gold flowering stage	8.403
	SRR8316908	Gold flowering stage	10.572
SRP132670	SRR6706286	Control	10.575
	SRR6706287	Light intensity 50%	12.149
	SRR6706288	Light intensity 20%	12.423
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	9.993
	CNS0095593	Slightly white alabastrum(diploid) 2	8.837
	CNS0095594	Slightly white alabastrum(diploid) 3	9.040
	CNS0095595	Whole white alabastrum(diploid) 2	7.986
	CNS0095596	Whole white alabastrum(diploid) 3	5.027
	CNS0095597	Whole white alabastrum(diploid) 4	8.302
	CNS0095598	Silvery flower (diploied) 1	17.087
	CNS0095599	Silvery flower (diploied) 2	10.066
	CNS0095600	Silvery flower (diploied) 3	12.366
	CNS0095601	Golden flower (diploid) 1	15.416
	CNS0095602	Golden flower (diploid) 2	17.273
	CNS0095603	Golden flower (diploid) 3	15.754
	CNS0095604	Slightly white alabastrum(tetraploid) 1	7.174
	CNS0095605	Slightly white alabastrum(tetraploid) 2	6.035
	CNS0095606	Slightly white alabastrum(tetraploid) 3	15.503
	CNS0095607	Whole white alabastrum(tetraploid) 1	4.378
	CNS0095608	Whole white alabastrum(tetraploid) 2	2.984
	CNS0095609	Whole white alabastrum(tetraploid) 3	8.151
	CNS0095610	Silvery flower (tetraploid) 1	9.942
	CNS0095611	Silvery flower (tetraploid) 2	8.512
	CNS0095612	Silvery flower (tetraploid) 3	6.039
	CNS0095613	Golden flower (tetraploid) 1	3.734
	CNS0095614	Golden flower (tetraploid) 2	7.729
	CNS0095615	Golden flower (tetraploid) 3	5.000
CRA001975	CRR073297	Stem 1	15.586
	CRR073298	Stem 2	15.492
	CRR073299	Stem 3	13.477
	CRR073300	Leaf 1	16.310
	CRR073301	Leaf 2	13.928
	CRR073302	Leaf 3	11.076
	CRR073303	Juvenile bud 1	11.895
	CRR073304	Juvenile bud 2	6.919
	CRR073305	Juvenile bud 3	18.017
	CRR073306	Third green 1	3.822
	CRR073307	Third green 2	3.015
	CRR073308	Third green 3	5.284
	CRR073309	Second white 1	4.177
	CRR073310	Second white 2	6.473
	CRR073311	Second white 3	5.364
	CRR073312	Silver flowering 1	5.784
	CRR073313	Silver flowering 2	6.066
	CRR073314	Silver flowering 3	4.416
	CRR073315	Gold flowering 1	6.449
	CRR073316	Gold flowering 2	12.797
	CRR073317	Gold flowering 3	7.782
	CRR073318	Tawny withering 1	24.942
	CRR073319	Tawny withering 2	22.159
	CRR073320	Tawny withering 3	26.749