Gene detail

Detail information of GWHGAAZE017309

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_002274626.1	2.47039E-88	PREDICTED: myb-related protein 305 [Vitis vinifera]
Swissprot	tr\|Q8LPH6\|MYB86_ARATH	1E-58	Transcription factor MYB86
trEMBL	tr\|F6HXY9\|F6HXY9_VITVI	9E-89	Putative uncharacterized protein {ECO:0000313\|EMBL:CCB59312.1}
TAIR10	AT3G13890.2	2E-57	myb domain protein 26

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000005	gene	4314252	4317362	+
GWHAAZE00000005	mRNA	4314252	4317362	+
GWHAAZE00000005	exon	4314252	4314362	+
GWHAAZE00000005	exon	4316118	4316217	+
GWHAAZE00000005	exon	4316328	4316457	+
GWHAAZE00000005	exon	4316618	4317362	+
GWHAAZE00000005	CDS	4314252	4314362	+
GWHAAZE00000005	CDS	4316118	4316217	+
GWHAAZE00000005	CDS	4316328	4316457	+
GWHAAZE00000005	CDS	4316618	4317362	+

Transcript Sequence
>GWHTAAZE017329 ATGCAAGGTAGTAGAGAGAAAGCGGAGATTTCGGCGTGGGTAGATCGGAGAGTGAAGTTTGAGGACGGAATTTATGGTCCATCACCGATGGTGGGGACACTAATACCAAGGGTGAAGAGAGGGCTATGGTCTCCTGAAGAAGATGAGAAGCTCATCAACTATATTTCCAACTATGGCCATGGCTGCTGGAGTTCTGTCCCTAGACTTGCTGGGTTACAGAGATGCGGAAAGAGTTGTAGACTGAGATGGATAAATTACCTGAGACCAGACTTAAAGCGTGGGAGCTTCTCTCCACAAGAAGCAGCTCTTATAATCGAACTCCATCGAATTCTTGGCAATAGGTGGGCTCAGATAGCGAAACACCTGCCTGGAAGAACAGACAATGAAGTAAAGAACTTTTGGAATTCAAGCATAAAGAAGAAGCTCGTCTCCCAGCTGGGCTTCTCTGACCATTTTTCAACTTTTCCTAACCTTCCAGCAATTAATCCAAATGTTTCATACGACGTCTTTAGTTACCCGCTTAATCCAAACCCTAATTTGATCCCAAATCCGCAACCACAACAGGATCTGTTTTACATACCCACCCCACCCCCACCAATCCTACAGCCCTTTGATCATAATCATGACGATAATAATAACCTCCATTACAATCTTAATTTGGTTTCTGTACTACCACCTGTCACTGTACCACTAGGCTCACGTTCATCCTACGATCCCGCCTGGCCATCGGGCTGTCACCCCCAACAAATTGATCATCATCAGCAGCAGCAGCTCTACAACCTGGATCCACCGATGTTTCCTGTGGTGCCGAAGCACTGTAACGTTAATCTACTACCTGCACAGGAAGAAGAAGGTGACCCTATTAATGTTAGCCTCTCATGCCTCACTCCTACGCGTGTGCCTTCTAATGAGTTGGAATTTATGGAGGCCATCATCATGTCATCTTTGCCATTGCCACCTCTACCAGCATCATCAACTTCATCAAAGTCCTCGTTGTCGTCATCGCCATCGTCGACGTTGACGCCGTTATCATCATGCAGTCAATTTGTTGTGAATCCCAATTTCACTTCAAGCTGGGGCCCATAG

Network for GWHGAAZE017309

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00249.32	Myb_DNA-binding	40	87	9.30E-15
PF00249.32	Myb_DNA-binding	93	135	6.00E-14

Protein Sequence

Gene family

Gene family	subfamily
Transcription Factors Family	MYB

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0003677	molecular_function	DNA binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	0.130
	SRR3591706	second leaf	0.000
	SRR3591707	mature leaf	0.000
	SRR3591708	Shoot apex	0.056
	SRR3591709	Stem	0.396
	SRR3591710	White floral bud	0.061
	SRR3591711	White flower	0.000
	SRR3591712	Green floral bud	0.371
	SRR3591713	Yellow flower	0.000
SRP173429	SRR8316895	Juvenile bud stage	3.764
	SRR8316896	Juvenile bud stage	2.314
	SRR8316897	Juvenile bud stage	0.103
	SRR8316894	Third green stage	0.164
	SRR8316900	Third green stage	1.021
	SRR8316901	Third green stage	0.609
	SRR8316898	Complete white stage	0.513
	SRR8316899	Complete white stage	5.328
	SRR8316903	Complete white stage	0.921
	SRR8316902	Silver flowering stage	0.016
	SRR8316904	Silver flowering stage	0.000
	SRR8316905	Silver flowering stage	0.000
	SRR8316906	Gold flowering stage	0.000
	SRR8316907	Gold flowering stage	0.000
	SRR8316908	Gold flowering stage	0.000
SRP132670	SRR6706286	Control	0.679
	SRR6706287	Light intensity 50%	0.811
	SRR6706288	Light intensity 20%	0.498
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	0.596
	CNS0095593	Slightly white alabastrum(diploid) 2	0.071
	CNS0095594	Slightly white alabastrum(diploid) 3	2.382
	CNS0095595	Whole white alabastrum(diploid) 2	0.093
	CNS0095596	Whole white alabastrum(diploid) 3	0.107
	CNS0095597	Whole white alabastrum(diploid) 4	0.059
	CNS0095598	Silvery flower (diploied) 1	0.000
	CNS0095599	Silvery flower (diploied) 2	0.020
	CNS0095600	Silvery flower (diploied) 3	0.171
	CNS0095601	Golden flower (diploid) 1	0.000
	CNS0095602	Golden flower (diploid) 2	0.000
	CNS0095603	Golden flower (diploid) 3	0.000
	CNS0095604	Slightly white alabastrum(tetraploid) 1	0.190
	CNS0095605	Slightly white alabastrum(tetraploid) 2	0.460
	CNS0095606	Slightly white alabastrum(tetraploid) 3	0.008
	CNS0095607	Whole white alabastrum(tetraploid) 1	0.022
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.041
	CNS0095609	Whole white alabastrum(tetraploid) 3	0.136
	CNS0095610	Silvery flower (tetraploid) 1	0.000
	CNS0095611	Silvery flower (tetraploid) 2	0.000
	CNS0095612	Silvery flower (tetraploid) 3	0.000
	CNS0095613	Golden flower (tetraploid) 1	0.000
	CNS0095614	Golden flower (tetraploid) 2	0.000
	CNS0095615	Golden flower (tetraploid) 3	0.000
CRA001975	CRR073297	Stem 1	14.230
	CRR073298	Stem 2	7.620
	CRR073299	Stem 3	20.304
	CRR073300	Leaf 1	0.323
	CRR073301	Leaf 2	0.465
	CRR073302	Leaf 3	0.142
	CRR073303	Juvenile bud 1	0.323
	CRR073304	Juvenile bud 2	0.231
	CRR073305	Juvenile bud 3	1.519
	CRR073306	Third green 1	0.060
	CRR073307	Third green 2	0.000
	CRR073308	Third green 3	0.000
	CRR073309	Second white 1	0.000
	CRR073310	Second white 2	0.000
	CRR073311	Second white 3	0.000
	CRR073312	Silver flowering 1	0.000
	CRR073313	Silver flowering 2	0.000
	CRR073314	Silver flowering 3	0.000
	CRR073315	Gold flowering 1	0.000
	CRR073316	Gold flowering 2	0.000
	CRR073317	Gold flowering 3	0.000
	CRR073318	Tawny withering 1	0.000
	CRR073319	Tawny withering 2	0.000
	CRR073320	Tawny withering 3	0.000