Gene detail

Detail information of GWHGAAZE017313

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_011080083.1	8.3305E-178	PREDICTED: glyoxylate/succinic semialdehyde reductase 2, chloroplastic [Sesamum indicum]
Swissprot	tr\|F4I907\|GLYR2_ARATH	2E-154	Glyoxylate/succinic semialdehyde reductase 2, chloroplastic (Precursor)
trEMBL	tr\|F6HY26\|F6HY26_VITVI	1E-174	Putative uncharacterized protein {ECO:0000313\|EMBL:CCB59349.1}
TAIR10	AT1G17650.1	8E-123	glyoxylate reductase 2

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000005	gene	4349489	4352742	+
GWHAAZE00000005	mRNA	4349489	4352742	+
GWHAAZE00000005	exon	4349489	4349675	+
GWHAAZE00000005	exon	4349787	4349853	+
GWHAAZE00000005	exon	4350256	4350321	+
GWHAAZE00000005	exon	4350584	4350659	+
GWHAAZE00000005	exon	4350731	4350786	+
GWHAAZE00000005	exon	4350925	4351009	+
GWHAAZE00000005	exon	4351245	4351305	+
GWHAAZE00000005	exon	4351505	4351557	+
GWHAAZE00000005	exon	4351668	4351738	+
GWHAAZE00000005	exon	4351833	4351905	+
GWHAAZE00000005	exon	4352398	4352454	+
GWHAAZE00000005	exon	4352578	4352742	+
GWHAAZE00000005	CDS	4349489	4349675	+
GWHAAZE00000005	CDS	4349787	4349853	+
GWHAAZE00000005	CDS	4350256	4350321	+
GWHAAZE00000005	CDS	4350584	4350659	+
GWHAAZE00000005	CDS	4350731	4350786	+
GWHAAZE00000005	CDS	4350925	4351009	+
GWHAAZE00000005	CDS	4351245	4351305	+
GWHAAZE00000005	CDS	4351505	4351557	+
GWHAAZE00000005	CDS	4351668	4351738	+
GWHAAZE00000005	CDS	4351833	4351905	+
GWHAAZE00000005	CDS	4352398	4352454	+
GWHAAZE00000005	CDS	4352578	4352742	+

Transcript Sequence
>GWHTAAZE017333 ATGGCGAAAGGCAACTGCAGTCACCACCTATCCACTTGTATTCTCATGAATTCAACCACTGCCACCATGTCTATGAGCTCGAGCTTTTTCCCTCCCATACCTACTAACTTTACACGCTCCAGCCGACCCATCTCTTCTCTATCCAAATTTTCTACTTCTTCTTCAACACCCCCCTCCATCATCCAAGCACGCATTGGGTTTTTGGGTCTTGGTATTATGGGTTCTCCCATGGCACATAATCTCCTTAAAGCAGGGTATGATGTAACTGTTTGGAATAGGACCAAGAGCAAATGCGAACCTCTCATCTCGCTCGGTGCAAAATATGAGTCCACTCCTGAGGAAGTAGCTGCATCTTGTGATGTTACATTTGCTATGCTTGCTGACCCTGAAAGTGCAGTTGATGTTGCTTGTGGAAACCATGGAGCTGCAAATGGAATGAGTCAAGGAAAAGGGTATGTAGATGTCTCTACGGTTGATGGTGACACTTCTAATTTGATTAGTGCACGTATCAAAGCTACTGGGGCACTATTTTTGGAGGCTCCAGTATCAGGCTCCAAGAAACCAGCAGAAGACGGACAGCTTATATTTCTCACTGCAGGTGACAGATCTCTATATGACACAGTTTCTCCGCACTTAGACATCATGGGGAAGTCGAGGTTCTTCCTTGGGGATGTTGGGAATGGAGCTGCTATGAAACTTGTTGTCAACATGATCATGGGAAGTATGATGGCATCTTTTTCCGAAGGACTGCTTCTGGGTGAGAAAGTAGGATTGGACCCAAGTGTACTGGTGGAGGTAGTGTCGCAGGGTGCTATTAGTGCGCCAATGTTCTCAATGAAAGGCCCTTCAATGGATTTGAGACTTGCTTTGGGATTAGCTGAATCAGTTTCACAACCCACTCCAATTGCAGCGGCTGCAAATGAACTATACAAGGTGGCAAAGTCTAGTGGCCTTGGCGACCACGACTTCTCAGCAGTAATTGAAGCACTCAAAGTGAAATTGCAACATCAAACATAA

Network for GWHGAAZE017313

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF03446.16	NAD_binding_2	64	220	3.10E-39
PF14833.7	NAD_binding_11	226	283	1.50E-11

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K18121	GLYR	Metabolic pathways	map01100
		Microbial metabolism in diverse environments	map01120
		Carbon metabolism	map01200
		Glyoxylate and dicarboxylate metabolism	map00630
		Butanoate metabolism	map00650

Gene Ontology

GO term	Ontology	Name
GO:0055114	biological_process	oxidation-reduction process
GO:0016491	molecular_function	oxidoreductase activity
GO:0050661	molecular_function	NADP binding
GO:0051287	molecular_function	NAD binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	28.632
	SRR3591706	second leaf	96.293
	SRR3591707	mature leaf	101.304
	SRR3591708	Shoot apex	64.572
	SRR3591709	Stem	36.474
	SRR3591710	White floral bud	36.236
	SRR3591711	White flower	44.843
	SRR3591712	Green floral bud	40.667
	SRR3591713	Yellow flower	64.767
SRP173429	SRR8316895	Juvenile bud stage	35.535
	SRR8316896	Juvenile bud stage	46.642
	SRR8316897	Juvenile bud stage	27.626
	SRR8316894	Third green stage	21.729
	SRR8316900	Third green stage	51.874
	SRR8316901	Third green stage	54.676
	SRR8316898	Complete white stage	16.038
	SRR8316899	Complete white stage	45.376
	SRR8316903	Complete white stage	27.445
	SRR8316902	Silver flowering stage	23.791
	SRR8316904	Silver flowering stage	29.699
	SRR8316905	Silver flowering stage	16.714
	SRR8316906	Gold flowering stage	51.210
	SRR8316907	Gold flowering stage	55.007
	SRR8316908	Gold flowering stage	53.733
SRP132670	SRR6706286	Control	44.980
	SRR6706287	Light intensity 50%	46.035
	SRR6706288	Light intensity 20%	51.349
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	36.312
	CNS0095593	Slightly white alabastrum(diploid) 2	25.972
	CNS0095594	Slightly white alabastrum(diploid) 3	26.457
	CNS0095595	Whole white alabastrum(diploid) 2	22.334
	CNS0095596	Whole white alabastrum(diploid) 3	27.871
	CNS0095597	Whole white alabastrum(diploid) 4	21.233
	CNS0095598	Silvery flower (diploied) 1	58.355
	CNS0095599	Silvery flower (diploied) 2	45.518
	CNS0095600	Silvery flower (diploied) 3	45.445
	CNS0095601	Golden flower (diploid) 1	56.754
	CNS0095602	Golden flower (diploid) 2	48.154
	CNS0095603	Golden flower (diploid) 3	49.026
	CNS0095604	Slightly white alabastrum(tetraploid) 1	27.748
	CNS0095605	Slightly white alabastrum(tetraploid) 2	25.174
	CNS0095606	Slightly white alabastrum(tetraploid) 3	38.071
	CNS0095607	Whole white alabastrum(tetraploid) 1	13.509
	CNS0095608	Whole white alabastrum(tetraploid) 2	13.586
	CNS0095609	Whole white alabastrum(tetraploid) 3	38.187
	CNS0095610	Silvery flower (tetraploid) 1	50.690
	CNS0095611	Silvery flower (tetraploid) 2	43.451
	CNS0095612	Silvery flower (tetraploid) 3	44.086
	CNS0095613	Golden flower (tetraploid) 1	41.648
	CNS0095614	Golden flower (tetraploid) 2	52.742
	CNS0095615	Golden flower (tetraploid) 3	57.034
CRA001975	CRR073297	Stem 1	56.183
	CRR073298	Stem 2	52.029
	CRR073299	Stem 3	39.820
	CRR073300	Leaf 1	42.749
	CRR073301	Leaf 2	42.347
	CRR073302	Leaf 3	39.101
	CRR073303	Juvenile bud 1	32.002
	CRR073304	Juvenile bud 2	25.871
	CRR073305	Juvenile bud 3	29.612
	CRR073306	Third green 1	23.905
	CRR073307	Third green 2	12.559
	CRR073308	Third green 3	16.911
	CRR073309	Second white 1	21.962
	CRR073310	Second white 2	27.854
	CRR073311	Second white 3	22.443
	CRR073312	Silver flowering 1	25.920
	CRR073313	Silver flowering 2	26.338
	CRR073314	Silver flowering 3	28.678
	CRR073315	Gold flowering 1	79.539
	CRR073316	Gold flowering 2	100.931
	CRR073317	Gold flowering 3	59.483
	CRR073318	Tawny withering 1	20.462
	CRR073319	Tawny withering 2	27.422
	CRR073320	Tawny withering 3	22.472