Gene detail

Detail information of GWHGAAZE017317

Functional Annotation

Database	Orthologs	Annotation
Nr	XP_010062641.1	PREDICTED: beta-fructofuranosidase, insoluble isoenzyme CWINV1-like [Eucalyptus grandis]
Swissprot	tr\|Q43866\|INV1_ARATH	Beta-fructofuranosidase, insoluble isoenzyme CWINV1 (Precursor)
trEMBL	tr\|A0A059BUY2\|A0A059BUY2_EUCGR	Uncharacterized protein {ECO:0000313\|EMBL:KCW69766.1}
TAIR10	AT3G13790.2	Glycosyl hydrolases family 32 protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000005	gene	4386021	4388332	+
GWHAAZE00000005	mRNA	4386021	4388332	+
GWHAAZE00000005	exon	4386021	4386902	+
GWHAAZE00000005	exon	4387072	4387230	+
GWHAAZE00000005	exon	4387343	4387584	+
GWHAAZE00000005	exon	4387693	4387783	+
GWHAAZE00000005	exon	4388138	4388332	+
GWHAAZE00000005	CDS	4386021	4386902	+
GWHAAZE00000005	CDS	4387072	4387230	+
GWHAAZE00000005	CDS	4387343	4387584	+
GWHAAZE00000005	CDS	4387693	4387783	+
GWHAAZE00000005	CDS	4388138	4388317	+
GWHAAZE00000005	three_prime_UTR	4388318	4388332	+

Transcript Sequence
>GWHTAAZE017337 ATGTATTTTAATGTAACAGGACCCATGATTTATAAAGGCATCTACCATTTGTTCTACCAGTACAACCCCCATGGTGCAGTTTGGGGTAACATAGTCTGGGCCCACTCTACATCAACGGATCTCGTCAACTGGACCCCACATGATCCTGCCATCTCCCCATCCCAACCGTCCGATATCAACGGCTGTTGGTCCGGTTCAGCCACCATACTCCCTGGTGGCAAACCGACCATTCTCTACACAGGAATTAACCCACAAAACCATCAGGTCCAAAATTTAGCTGTGCCCAAAAATTTGTCCGACCCGTTTCTTAGAGAATGGGTCAAATCACCTTATAACCCGCTGATCAAACCAACATCCGTTAACAATATCAATTCAAGCTCATTTAGGGACCCGACTACGGCTTGGGTTGGTTCGGATGGAAAATGGAGGGTGATAATCGGAAGCAAAATTGATCGTCAGGGAATGGCAATTTTATACAGAAGCAAAGATTTTGTTAATTGGAATAAAGCCAATCACCCTTTACATTCATCAAAAAATACTGGAATGTGGGAGTGCCCGGATTTCTACCCGGTTTCTACTAGTGCCCAAGATGGTCTAGATACATCAATGATGGGTTCTGAAGTTAAACACGTGCTTAAGGCGAGTTTGGATGATTCTAAGCACGAGTATTACACAATTGGAACATATAACCACAACAAGGATATTTATACCCCGGATAAGGGATCTGTGGATAACGGGTCGGGCTTGAGGTATGATTATGGAAAATTTTATGCGTCGAAGACCTTTTTCGATGATTTTAAGAATAGGAGAATCTTGTGGGGCTGGATTAATGAATCAACTAATGCAACCATTGATATAATGAAGGGATGGTCCGGAATTCAGGCAATTCCGAGAAAAATATGGTTGGGTAAATCTGGAAAACAATTATTGCAGTGGCCAATCGTAGAGATTGAAAAACTACGTGCGAACCGAGTCGACGCACCTAGCAGGGTGCTAAAGGGTGGTGATGTGCTTGAAGTTGCGGGGGTCACAGCTACTCAGGCAGACGTAGAGATATTGTTCGAAATAAAAGGGTTTGAAAATGCGGAGGTGCTGGATCCAAGTTGGAAAGATCCACAAGTGATATGTAGCCAAAAGGGGGTAAAAGGAGGAAGAGGGGTTGGACCATTTGGGTTGCTAGTTTTGGCTTCAAATGACTTGCAAGAATACACAGCTGTCTTCTTTAGAATTTTTAAAAGTGAAGCTGACAAATATGTGGTTCTCATGTGTAGTGACCAGACCAGGTCTTCATTAGATTTGGATTATGACAAGACAACTTATGGGGCTTTTGTGGATGTTGATCCTCTTCACGAGAAACTCTCTCTTAGGAGTTTGATAGATCGGTCCATAGTGGAGAGCTTTGGAGGAGAGGGGAAGGCTTGCATCAGTGCTAGGGTTTATCCCACGTTAGCAATAGAAGGTGGGGCCCACTTGTATGCCTTCAACAACGGAACAGAGAGCGTAATGATCTCAAGATTCAGCGCTTGGAGCATGAAAAAAGCTCACATCTATTGAAACCCAACAACTTAA

Network for GWHGAAZE017317

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00251.21	Glyco_hydro_32N	7	313	8.50E-99
PF08244.13	Glyco_hydro_32C	316	510	1.70E-27

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K01193	INV, sacA	Metabolic pathways	map01100
		Biosynthesis of secondary metabolites	map01110
		Galactose metabolism	map00052
		Starch and sucrose metabolism	map00500

Gene Ontology

GO term	Ontology	Name
GO:0005975	biological_process	carbohydrate metabolic process
GO:0004553	molecular_function	hydrolase activity, hydrolyzing O-glycosyl compounds

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	0.220
	SRR3591706	second leaf	1.338
	SRR3591707	mature leaf	0.092
	SRR3591708	Shoot apex	1.671
	SRR3591709	Stem	0.129
	SRR3591710	White floral bud	1.629
	SRR3591711	White flower	1.457
	SRR3591712	Green floral bud	0.534
	SRR3591713	Yellow flower	39.627
SRP173429	SRR8316895	Juvenile bud stage	0.466
	SRR8316896	Juvenile bud stage	2.331
	SRR8316897	Juvenile bud stage	0.100
	SRR8316894	Third green stage	0.362
	SRR8316900	Third green stage	0.758
	SRR8316901	Third green stage	2.160
	SRR8316898	Complete white stage	4.241
	SRR8316899	Complete white stage	1.645
	SRR8316903	Complete white stage	4.456
	SRR8316902	Silver flowering stage	3.033
	SRR8316904	Silver flowering stage	7.020
	SRR8316905	Silver flowering stage	4.189
	SRR8316906	Gold flowering stage	41.924
	SRR8316907	Gold flowering stage	19.186
	SRR8316908	Gold flowering stage	54.153
SRP132670	SRR6706286	Control	3.264
	SRR6706287	Light intensity 50%	1.500
	SRR6706288	Light intensity 20%	0.620
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	1.098
	CNS0095593	Slightly white alabastrum(diploid) 2	0.033
	CNS0095594	Slightly white alabastrum(diploid) 3	0.675
	CNS0095595	Whole white alabastrum(diploid) 2	0.141
	CNS0095596	Whole white alabastrum(diploid) 3	0.148
	CNS0095597	Whole white alabastrum(diploid) 4	0.576
	CNS0095598	Silvery flower (diploied) 1	0.441
	CNS0095599	Silvery flower (diploied) 2	0.235
	CNS0095600	Silvery flower (diploied) 3	2.301
	CNS0095601	Golden flower (diploid) 1	2.370
	CNS0095602	Golden flower (diploid) 2	6.640
	CNS0095603	Golden flower (diploid) 3	5.838
	CNS0095604	Slightly white alabastrum(tetraploid) 1	0.235
	CNS0095605	Slightly white alabastrum(tetraploid) 2	0.144
	CNS0095606	Slightly white alabastrum(tetraploid) 3	0.142
	CNS0095607	Whole white alabastrum(tetraploid) 1	0.082
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.000
	CNS0095609	Whole white alabastrum(tetraploid) 3	0.170
	CNS0095610	Silvery flower (tetraploid) 1	0.573
	CNS0095611	Silvery flower (tetraploid) 2	0.070
	CNS0095612	Silvery flower (tetraploid) 3	1.025
	CNS0095613	Golden flower (tetraploid) 1	2.692
	CNS0095614	Golden flower (tetraploid) 2	5.797
	CNS0095615	Golden flower (tetraploid) 3	0.089
CRA001975	CRR073297	Stem 1	0.489
	CRR073298	Stem 2	0.316
	CRR073299	Stem 3	0.439
	CRR073300	Leaf 1	0.299
	CRR073301	Leaf 2	0.194
	CRR073302	Leaf 3	0.026
	CRR073303	Juvenile bud 1	0.101
	CRR073304	Juvenile bud 2	0.047
	CRR073305	Juvenile bud 3	0.067
	CRR073306	Third green 1	0.337
	CRR073307	Third green 2	0.373
	CRR073308	Third green 3	0.539
	CRR073309	Second white 1	2.780
	CRR073310	Second white 2	3.779
	CRR073311	Second white 3	3.643
	CRR073312	Silver flowering 1	23.963
	CRR073313	Silver flowering 2	10.747
	CRR073314	Silver flowering 3	20.334
	CRR073315	Gold flowering 1	0.799
	CRR073316	Gold flowering 2	0.291
	CRR073317	Gold flowering 3	1.371
	CRR073318	Tawny withering 1	28.524
	CRR073319	Tawny withering 2	67.951
	CRR073320	Tawny withering 3	3.577