Gene detail

Detail information of GWHGAAZE017318

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_010242234.1	0	PREDICTED: zinc finger protein NUTCRACKER-like isoform X1 [Nelumbo nucifera]
Swissprot	tr\|Q8H1F5\|IDD7_ARATH	1E-113	Protein indeterminate-domain 7 {ECO:0000303\|PubMed:16784536}
trEMBL	tr\|A5BN05\|A5BN05_VITVI	0	Putative uncharacterized protein {ECO:0000313\|EMBL:CAN79105.1}
TAIR10	AT1G55110.1	2E-93	indeterminate(ID)-domain 7

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000005	gene	4394146	4396092	+
GWHAAZE00000005	mRNA	4394146	4396092	+
GWHAAZE00000005	exon	4394146	4394481	+
GWHAAZE00000005	exon	4394610	4395006	+
GWHAAZE00000005	exon	4395192	4396092	+
GWHAAZE00000005	five_prime_UTR	4394146	4394279	+
GWHAAZE00000005	CDS	4394280	4394481	+
GWHAAZE00000005	CDS	4394610	4395006	+
GWHAAZE00000005	CDS	4395192	4396092	+

Transcript Sequence
>GWHTAAZE017338 TTTTTTTCCTTTCTAGTTGGGTTTTTGTCTTCAATTACTTCTCTCTCACACACATCTATATTAAGGTATATATATATCTCACGTGATGCAAACCCATAGATCTTTAGAATGATTACATATATGCAAAGAAGAAGATGAAAGGTGTGATGATCAAACAACAGCAGCCATTTATAGAGGAAAATCTGTCCAATTTGACTTGTGCTTCTGGTGAAACCAGTATTTCTTCAGCTGGCAACAAAGCTGAAAATTGCAGCATATACCCACACCAGTACTTTACTCCTTCATTAAACCAAACTCCACCACCTAAAAAGAAGAGAAATCTACCAGGGAACCCAGACCCAGATGCAGAAGTGATAGCTTTGTCACCAAGATCTCTACTGGCAACCAACAGATTTGTGTGTGAAATCTGTAACAAAGGGTTTCAGAGAGACCAAAATCTTCAACTTCATAGAAGAGGGCATAATTTGCCATGGAAGTTGAAGCAGAGAACGAGCAAAGAGGTGAAGAAGAAGGTGTATGTGTGCCCAGAAGCAAGCTGTGTGCACCATGAGCCAGCTAGGGCTCTTGGGGATCTCACTGGTATCAAGAAGCACTTTTGCAGAAAACATGGTGAAAAGAAGTGGAAATGTGGCAAATGCTCAAAACACTATGCAGTTCAATCTGATTGGAAAGCTCACTCTAAGACCTGTGGCACTAGAGAGTACAGATGTGACTGTGGTACCCTTTTCTCAAGGAGGGATAGTTTCATCACTCACAGAGCCTTTTGTGATGTTTTAGCACAAGAAAGTGCAAGGTCAATTACTGAAAACACAGTACTTATCCCCTCTCAATCTGGAACTAATTCAGGTTCTCATATACTCCATCAATTCTCTACGAAAAAAGAGCAAGAAAATTTTGGTCTAAGGCCAGAGATTCCACCATGGTTAGCTGTGGAAGGTAGTAGTACTGATTTCTTCAGCAACTCATTAAATCAAGAATTGAGAGAGACCCAAATAGAAGAGAACCCAAACCCTAGACCTAGTCCTAGGATTGGACCACCCAGTACCCTACTACCCCCATACCATCAAGCACCCTCCGATCCTCACATGTCTGCAACAGCATTGCTGCAAAAAGCAGCTCAGATGGGTGTAAGTATGAGCAGCAAGAACTGTTCATCATCAACAATGATTGGGACCCATCAAGCTCACGTGTCTGCTAATTTTGGACTGAATTTGTCATCACGTGAAGAAATGGGCAGTGAGTTGTTTGTACACAGCTTGGCTTCATTAGGGAATAAAGCTGCAACTTCTACAGGTGGAGGTGGACCTTCATCTTTTATTGATCAAGAAATGATGAACCCTATTTCTTGTAGAAATGGGTTTGATGGGTCAACCTTTGAAGATGCATTTAATGGGATCTTGGATTCAAAGAACGGCTGTGATTTCAATGCAAGTAGTCTATCATCAAAGACAACGACCCATCATCCTATTGATCATGATAATATCAATGGCAATGATAGTATGACCAGAGATTTTCTGGGTCTAAGAGCTCTGTCTCAAGGTGATGTTTTTAGCATTGCTGCTGGTCTTGGTCACAGTATGAACAATTCTCAAGAAAATCAGAATCAAACCCAAAATTCATGGCAACGTAATTAG

Network for GWHGAAZE017318

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00096.27	zf-C2H2	87	109	0.005

Protein Sequence

Gene family

Gene family	subfamily
Transcription Factors Family	C2H2

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0003676	molecular_function	nucleic acid binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	1.008
	SRR3591706	second leaf	5.436
	SRR3591707	mature leaf	7.074
	SRR3591708	Shoot apex	10.684
	SRR3591709	Stem	0.591
	SRR3591710	White floral bud	4.048
	SRR3591711	White flower	3.417
	SRR3591712	Green floral bud	4.238
	SRR3591713	Yellow flower	1.265
SRP173429	SRR8316895	Juvenile bud stage	1.646
	SRR8316896	Juvenile bud stage	0.675
	SRR8316897	Juvenile bud stage	0.188
	SRR8316894	Third green stage	1.030
	SRR8316900	Third green stage	0.775
	SRR8316901	Third green stage	0.582
	SRR8316898	Complete white stage	0.052
	SRR8316899	Complete white stage	2.241
	SRR8316903	Complete white stage	0.410
	SRR8316902	Silver flowering stage	0.149
	SRR8316904	Silver flowering stage	0.211
	SRR8316905	Silver flowering stage	0.041
	SRR8316906	Gold flowering stage	0.363
	SRR8316907	Gold flowering stage	0.618
	SRR8316908	Gold flowering stage	0.309
SRP132670	SRR6706286	Control	0.419
	SRR6706287	Light intensity 50%	0.536
	SRR6706288	Light intensity 20%	0.695
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	1.476
	CNS0095593	Slightly white alabastrum(diploid) 2	0.450
	CNS0095594	Slightly white alabastrum(diploid) 3	0.580
	CNS0095595	Whole white alabastrum(diploid) 2	0.932
	CNS0095596	Whole white alabastrum(diploid) 3	0.515
	CNS0095597	Whole white alabastrum(diploid) 4	0.593
	CNS0095598	Silvery flower (diploied) 1	1.720
	CNS0095599	Silvery flower (diploied) 2	1.892
	CNS0095600	Silvery flower (diploied) 3	0.544
	CNS0095601	Golden flower (diploid) 1	1.236
	CNS0095602	Golden flower (diploid) 2	0.867
	CNS0095603	Golden flower (diploid) 3	0.977
	CNS0095604	Slightly white alabastrum(tetraploid) 1	1.492
	CNS0095605	Slightly white alabastrum(tetraploid) 2	1.779
	CNS0095606	Slightly white alabastrum(tetraploid) 3	3.628
	CNS0095607	Whole white alabastrum(tetraploid) 1	1.221
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.285
	CNS0095609	Whole white alabastrum(tetraploid) 3	1.286
	CNS0095610	Silvery flower (tetraploid) 1	0.362
	CNS0095611	Silvery flower (tetraploid) 2	0.581
	CNS0095612	Silvery flower (tetraploid) 3	0.197
	CNS0095613	Golden flower (tetraploid) 1	0.196
	CNS0095614	Golden flower (tetraploid) 2	0.545
	CNS0095615	Golden flower (tetraploid) 3	0.065
CRA001975	CRR073297	Stem 1	2.705
	CRR073298	Stem 2	3.386
	CRR073299	Stem 3	2.995
	CRR073300	Leaf 1	1.476
	CRR073301	Leaf 2	1.285
	CRR073302	Leaf 3	0.616
	CRR073303	Juvenile bud 1	0.757
	CRR073304	Juvenile bud 2	0.142
	CRR073305	Juvenile bud 3	1.174
	CRR073306	Third green 1	0.086
	CRR073307	Third green 2	0.000
	CRR073308	Third green 3	0.038
	CRR073309	Second white 1	0.040
	CRR073310	Second white 2	0.124
	CRR073311	Second white 3	0.137
	CRR073312	Silver flowering 1	0.872
	CRR073313	Silver flowering 2	0.391
	CRR073314	Silver flowering 3	0.186
	CRR073315	Gold flowering 1	1.632
	CRR073316	Gold flowering 2	3.118
	CRR073317	Gold flowering 3	1.297
	CRR073318	Tawny withering 1	0.539
	CRR073319	Tawny withering 2	0.610
	CRR073320	Tawny withering 3	0.265