Gene detail

Detail information of GWHGAAZE017338

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_008228307.1	0	PREDICTED: 3-epi-6-deoxocathasterone 23-monooxygenase [Prunus mume]
Swissprot	tr\|Q94IA6\|C90D1_ARATH	0	3-epi-6-deoxocathasterone 23-monooxygenase
trEMBL	tr\|B9N195\|B9N195_POPTR	0	Cytochrome P450 family protein {ECO:0000313\|EMBL:EEE83213.2}
TAIR10	AT3G13730.1	1E-163	cytochrome P450, family 90, subfamily D, polypeptide 1

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000005	gene	4629101	4631283	+
GWHAAZE00000005	mRNA	4629101	4631283	+
GWHAAZE00000005	exon	4629101	4629361	+
GWHAAZE00000005	exon	4629476	4629800	+
GWHAAZE00000005	exon	4629933	4630059	+
GWHAAZE00000005	exon	4630285	4630460	+
GWHAAZE00000005	exon	4630546	4630635	+
GWHAAZE00000005	exon	4630735	4630920	+
GWHAAZE00000005	exon	4631158	4631283	+
GWHAAZE00000005	five_prime_UTR	4629101	4629131	+
GWHAAZE00000005	CDS	4629132	4629361	+
GWHAAZE00000005	CDS	4629476	4629800	+
GWHAAZE00000005	CDS	4629933	4630059	+
GWHAAZE00000005	CDS	4630285	4630460	+
GWHAAZE00000005	CDS	4630546	4630635	+
GWHAAZE00000005	CDS	4630735	4630920	+
GWHAAZE00000005	CDS	4631158	4631283	+

Transcript Sequence
>GWHTAAZE017358 CTCCTCTGAGTTTAAGAAAAAATCCAAAAAAATGGACAACATTATTTGGATTTTATTTACTACATCAACAATCTTCTTCTTGATCATATTTCTCTACAAGAAAATCAAAACCTCCATTAACATTAACCTTTCCCCATCAAAATTCAAATCCCCACTCCCCTTAGGTACTCTTGGATGGCCCTTTATCGGAGAAACCATCGATTTCATCTCTTGTGCTTATACAGACCACCCTGAATCCTTTATGAATAAGCGCCGCCTCATGTATGGGAATGTTTTCAAGTCTCATATATTTGGAAGCGCAACAATAGTTTCAACTGATGCAGAGTTGAGTAGATGTGTTTTACAGAGTGATTCAAAGACTTTTGTGCCTTCTTACCCAAAATCTCTCACTGAATTGATGGGAAAGTCCTCTATTTTGCTCATTAATGGAAGCTTACAGAGGAGAGTCCATGGACTTATCGGTGCTTTCTTCAAATCCCCACTTCTCAAAGCTCAAATCACTAGAGATATGCAAAAATATGTTCAAGAATCAATGAACTGCTGGAAAGAAGATCAACCCATTTACATCCAAGATGAAACCAAGAAAATTGCCTTTCAAGTACTAGTGAAAGCATTGATTAGCTTGGATCCAGGTGAAGAAATGGAGTTCTTGAAGAAACAGTTTCAAGAATTCATCGCGGGTCTCATGTCTTTACCCATAAACATACCCGGAATTCCGAAAGATGTAGTGGATGTTTTGTTGAACGATACAAGCGAACGACTAACAGATGATTTGATATCTGATAATATGATCGACTTGATGATACCGGGCGAGGATTCAGTACCGGTTCTTATGTCTCTTGCTATAAAATACCTCTCGGATTGTCCTTCTGCTCTCCAACAATTAACGGAGGAGAATATGATGTTGAAGAGACAAAAAGATCAGCTTGGAGAGCTACTGTGTTGGAGTGATTATTTGTCTTTAACATTCACACAAAATGTGATTACAGAGACGCTAAGGATGGGAAATATTATAAATGGTGTAATGAGAAAAGCCATGAAAGATATAAAGATTAAAGGGTATTTGATACCAAAGGGATGGTGTGTTTTCACGTATTTTAGATCAGTTCATCTTGATGAAAATCAATATGACTCTCCTTATAAATTCAACCCATGGAGGTGGCAAGGGAAGGACATGAGCAGCTGTAGCTTCACCCCATTTGGAGGTGGTCAAAGACTCTGCCCTGGCCTTGACTTGGCCAGGCTTGAAGCTTCTATCTTCCTCCACCACTTTGTCACTCAATTCAGGTAA

Network for GWHGAAZE017338

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00067.23	p450	43	195	2.00E-05
PF00067.23	p450	228	419	1.40E-39

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K12638	CYP90D1	Metabolic pathways	map01100
		Biosynthesis of secondary metabolites	map01110
		Brassinosteroid biosynthesis	map00905

Gene Ontology

GO term	Ontology	Name
GO:0055114	biological_process	oxidation-reduction process
GO:0005506	molecular_function	iron ion binding
GO:0016705	molecular_function	oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen
GO:0020037	molecular_function	heme binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	9.253
	SRR3591706	second leaf	14.390
	SRR3591707	mature leaf	2.328
	SRR3591708	Shoot apex	2.802
	SRR3591709	Stem	7.046
	SRR3591710	White floral bud	1.230
	SRR3591711	White flower	0.548
	SRR3591712	Green floral bud	1.744
	SRR3591713	Yellow flower	0.268
SRP173429	SRR8316895	Juvenile bud stage	0.761
	SRR8316896	Juvenile bud stage	1.083
	SRR8316897	Juvenile bud stage	1.149
	SRR8316894	Third green stage	1.095
	SRR8316900	Third green stage	3.405
	SRR8316901	Third green stage	3.431
	SRR8316898	Complete white stage	2.841
	SRR8316899	Complete white stage	13.563
	SRR8316903	Complete white stage	5.608
	SRR8316902	Silver flowering stage	1.089
	SRR8316904	Silver flowering stage	2.245
	SRR8316905	Silver flowering stage	0.207
	SRR8316906	Gold flowering stage	0.802
	SRR8316907	Gold flowering stage	0.606
	SRR8316908	Gold flowering stage	0.260
SRP132670	SRR6706286	Control	1.395
	SRR6706287	Light intensity 50%	1.723
	SRR6706288	Light intensity 20%	1.795
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	0.991
	CNS0095593	Slightly white alabastrum(diploid) 2	3.956
	CNS0095594	Slightly white alabastrum(diploid) 3	0.768
	CNS0095595	Whole white alabastrum(diploid) 2	2.945
	CNS0095596	Whole white alabastrum(diploid) 3	4.363
	CNS0095597	Whole white alabastrum(diploid) 4	4.852
	CNS0095598	Silvery flower (diploied) 1	0.227
	CNS0095599	Silvery flower (diploied) 2	1.009
	CNS0095600	Silvery flower (diploied) 3	2.130
	CNS0095601	Golden flower (diploid) 1	0.785
	CNS0095602	Golden flower (diploid) 2	1.521
	CNS0095603	Golden flower (diploid) 3	1.373
	CNS0095604	Slightly white alabastrum(tetraploid) 1	4.226
	CNS0095605	Slightly white alabastrum(tetraploid) 2	2.839
	CNS0095606	Slightly white alabastrum(tetraploid) 3	7.705
	CNS0095607	Whole white alabastrum(tetraploid) 1	1.010
	CNS0095608	Whole white alabastrum(tetraploid) 2	2.256
	CNS0095609	Whole white alabastrum(tetraploid) 3	3.659
	CNS0095610	Silvery flower (tetraploid) 1	2.096
	CNS0095611	Silvery flower (tetraploid) 2	1.963
	CNS0095612	Silvery flower (tetraploid) 3	3.112
	CNS0095613	Golden flower (tetraploid) 1	0.093
	CNS0095614	Golden flower (tetraploid) 2	3.545
	CNS0095615	Golden flower (tetraploid) 3	1.044
CRA001975	CRR073297	Stem 1	0.688
	CRR073298	Stem 2	1.210
	CRR073299	Stem 3	1.039
	CRR073300	Leaf 1	4.804
	CRR073301	Leaf 2	4.183
	CRR073302	Leaf 3	2.445
	CRR073303	Juvenile bud 1	5.821
	CRR073304	Juvenile bud 2	4.156
	CRR073305	Juvenile bud 3	4.039
	CRR073306	Third green 1	1.265
	CRR073307	Third green 2	0.897
	CRR073308	Third green 3	1.273
	CRR073309	Second white 1	1.178
	CRR073310	Second white 2	1.002
	CRR073311	Second white 3	0.500
	CRR073312	Silver flowering 1	0.084
	CRR073313	Silver flowering 2	0.080
	CRR073314	Silver flowering 3	0.309
	CRR073315	Gold flowering 1	0.673
	CRR073316	Gold flowering 2	1.163
	CRR073317	Gold flowering 3	0.084
	CRR073318	Tawny withering 1	3.638
	CRR073319	Tawny withering 2	0.953
	CRR073320	Tawny withering 3	3.656