Detail information of GWHGAAZE017346


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_010262218.13.78876E-76PREDICTED: dof zinc finger protein DOF3.1 [Nelumbo nucifera]
Swissprottr|O82155|DOF17_ARATH3E-38Dof zinc finger protein DOF1.7
trEMBLtr|A0A068TPR7|A0A068TPR7_COFCA4E-70Coffea canephora DH200=94 genomic scaffold, scaffold_2 {ECO:0000313|EMBL:CDO97934.1}
TAIR10AT1G51700.15E-32DOF zinc finger protein 1

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000005gene48566354857384+
GWHAAZE00000005mRNA48566354857384+
GWHAAZE00000005exon48566354857384+
GWHAAZE00000005CDS48566354857384+
Transcript Sequence

Network for GWHGAAZE017346

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF02701.16zf-Dof18742.60E-33
Protein Sequence

Gene family

Gene familysubfamily
Transcription Factors FamilyC2C2-Dof

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName
GO:0006355biological_processregulation of transcription, DNA-templated
GO:0003677molecular_functionDNA binding

Expression pattern

Created with Highcharts 5.0.4Chart context menuExpression pattern for GWHGAAZE017346.youngest leafsecond leafmature leafShoot apexStemWhite floral budWhite flowerGreen floral budYellow flowerJuvenile bud stage 1Juvenile bud stage 2Juvenile bud stage 3Third green stage 1Third green stage 2Third green stage 3Complete white stage 1Complete white stage 2Complete white stage 3Silver flowering stage 1Silver flowering stage 2Silver flowering stage 3Gold flowering stage 1Gold flowering stage 2Gold flowering stage 3Control 1Light intensity 50%Light intensity 20%Slightly white alabastrum(diploid) 1Slightly white alabastrum(diploid) 2Slightly white alabastrum(diploid) 3Whole white alabastrum(diploid) 1Whole white alabastrum(diploid) 2Whole white alabastrum(diploid) 3Silvery flower (diploied) 1Silvery flower (diploied) 2Silvery flower (diploied) 3Golden flower (diploid) 1Golden flower (diploid) 2Golden flower (diploid) 3Slightly white alabastrum(tetraploid) 1Slightly white alabastrum(tetraploid) 2Slightly white alabastrum(tetraploid) 3Whole white alabastrum(tetraploid) 1Whole white alabastrum(tetraploid) 2Whole white alabastrum(tetraploid) 3Silvery flower (tetraploid) 1Silvery flower (tetraploid) 2Silvery flower (tetraploid) 3Golden flower (tetraploid) 1Golden flower (tetraploid) 2Golden flower (tetraploid) 3Stem 1Stem 2Stem 3Leaf 1Leaf 2Leaf 3Juvenile bud 1Juvenile bud 2Juvenile bud 3Third green 1Third green 2Third green 3Second white 1Second white 2Second white 3Silver flowering 1Silver flowering 2Silver flowering 3Gold flowering 1Gold flowering 2Gold flowering 3Tawny withering 1Tawny withering 2Tawny withering 30102030405060708090100Highcharts.com

Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf45.738
SRR3591706second leaf18.299
SRR3591707mature leaf35.539
SRR3591708Shoot apex13.084
SRR3591709Stem47.734
SRR3591710White floral bud20.735
SRR3591711White flower31.895
SRR3591712Green floral bud19.299
SRR3591713Yellow flower14.150
SRP173429 SRR8316895Juvenile bud stage 51.946
SRR8316896Juvenile bud stage 49.020
SRR8316897Juvenile bud stage 35.770
SRR8316894Third green stage 9.579
SRR8316900Third green stage 20.565
SRR8316901Third green stage 32.082
SRR8316898Complete white stage 5.133
SRR8316899Complete white stage 54.270
SRR8316903Complete white stage 9.937
SRR8316902Silver flowering stage7.314
SRR8316904Silver flowering stage8.936
SRR8316905Silver flowering stage3.453
SRR8316906Gold flowering stage 13.231
SRR8316907Gold flowering stage 10.561
SRR8316908Gold flowering stage 9.265
SRP132670SRR6706286Control10.995
SRR6706287Light intensity 50%9.592
SRR6706288Light intensity 20%10.992
CNP0000432CNS0095592Slightly white alabastrum(diploid) 131.036
CNS0095593Slightly white alabastrum(diploid) 257.267
CNS0095594Slightly white alabastrum(diploid) 350.506
CNS0095595Whole white alabastrum(diploid) 243.634
CNS0095596Whole white alabastrum(diploid) 37.886
CNS0095597Whole white alabastrum(diploid) 423.414
CNS0095598Silvery flower (diploied) 169.369
CNS0095599Silvery flower (diploied) 288.295
CNS0095600Silvery flower (diploied) 334.633
CNS0095601Golden flower (diploid) 152.306
CNS0095602Golden flower (diploid) 249.660
CNS0095603Golden flower (diploid) 352.645
CNS0095604Slightly white alabastrum(tetraploid) 19.482
CNS0095605Slightly white alabastrum(tetraploid) 28.942
CNS0095606Slightly white alabastrum(tetraploid) 314.379
CNS0095607Whole white alabastrum(tetraploid) 110.010
CNS0095608Whole white alabastrum(tetraploid) 28.091
CNS0095609Whole white alabastrum(tetraploid) 36.709
CNS0095610Silvery flower (tetraploid) 113.963
CNS0095611Silvery flower (tetraploid) 28.391
CNS0095612Silvery flower (tetraploid) 35.620
CNS0095613Golden flower (tetraploid) 110.497
CNS0095614Golden flower (tetraploid) 211.708
CNS0095615Golden flower (tetraploid) 35.269
CRA001975CRR073297Stem 120.095
CRR073298Stem 224.447
CRR073299Stem 325.848
CRR073300Leaf 135.647
CRR073301Leaf 251.479
CRR073302Leaf 323.340
CRR073303Juvenile bud 126.737
CRR073304Juvenile bud 226.321
CRR073305Juvenile bud 355.876
CRR073306Third green 110.459
CRR073307Third green 217.390
CRR073308Third green 317.690
CRR073309Second white 14.673
CRR073310Second white 210.617
CRR073311Second white 36.703
CRR073312Silver flowering 16.520
CRR073313Silver flowering 29.821
CRR073314Silver flowering 38.422
CRR073315Gold flowering 117.693
CRR073316Gold flowering 217.139
CRR073317Gold flowering 317.780
CRR073318Tawny withering 142.659
CRR073319Tawny withering 251.199
CRR073320Tawny withering 349.932