Detail information of GWHGAAZE017347


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_010693148.10PREDICTED: ubiquitin carboxyl-terminal hydrolase 6-like [Beta vulgaris subsp. vulgaris]
Swissprottr|Q949Y0|UBP6_ARATH0Ubiquitin carboxyl-terminal hydrolase 6
trEMBLtr|D7U032|D7U032_VITVI0Ubiquitin carboxyl-terminal hydrolase {ECO:0000256|RuleBase:RU004435}
TAIR10AT1G51710.10ubiquitin-specific protease 6

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000005gene48950464903979-
GWHAAZE00000005mRNA48950464903979-
GWHAAZE00000005exon48950464895212-
GWHAAZE00000005exon48953074895417-
GWHAAZE00000005exon48963224896370-
GWHAAZE00000005exon48964604896555-
GWHAAZE00000005exon48966604896740-
GWHAAZE00000005exon48969694897038-
GWHAAZE00000005exon48972504897338-
GWHAAZE00000005exon48977404897848-
GWHAAZE00000005exon48992914899341-
GWHAAZE00000005exon48997064899773-
GWHAAZE00000005exon48998554899914-
GWHAAZE00000005exon49006094900735-
GWHAAZE00000005exon49008554900955-
GWHAAZE00000005exon49020314902138-
GWHAAZE00000005exon49022184902253-
GWHAAZE00000005exon49023734902518-
GWHAAZE00000005exon49036744903827-
GWHAAZE00000005exon49039774903979-
GWHAAZE00000005CDS49039774903979-
GWHAAZE00000005CDS49036744903827-
GWHAAZE00000005CDS49023734902518-
GWHAAZE00000005CDS49022184902253-
GWHAAZE00000005CDS49020314902138-
GWHAAZE00000005CDS49008554900955-
GWHAAZE00000005CDS49006094900735-
GWHAAZE00000005CDS48998554899914-
GWHAAZE00000005CDS48997064899773-
GWHAAZE00000005CDS48992914899341-
GWHAAZE00000005CDS48977404897848-
GWHAAZE00000005CDS48972504897338-
GWHAAZE00000005CDS48969694897038-
GWHAAZE00000005CDS48966604896740-
GWHAAZE00000005CDS48964604896555-
GWHAAZE00000005CDS48963224896370-
GWHAAZE00000005CDS48953074895417-
GWHAAZE00000005CDS48950464895212-
Transcript Sequence

Network for GWHGAAZE017347

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00240.24ubiquitin591226.30E-08
PF00443.30UCH1545051.70E-48
Protein Sequence

Gene family

Gene familysubfamily
Ubiquitin FamilyUSP

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName
GO:0006511biological_processubiquitin-dependent protein catabolic process
GO:0016579biological_processprotein deubiquitination
GO:0005515molecular_functionprotein binding
GO:0036459molecular_functionthiol-dependent ubiquitinyl hydrolase activity

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf120.119
SRR3591706second leaf63.703
SRR3591707mature leaf55.404
SRR3591708Shoot apex101.116
SRR3591709Stem112.739
SRR3591710White floral bud127.311
SRR3591711White flower179.720
SRR3591712Green floral bud104.276
SRR3591713Yellow flower190.473
SRP173429 SRR8316895Juvenile bud stage 63.318
SRR8316896Juvenile bud stage 99.900
SRR8316897Juvenile bud stage 47.831
SRR8316894Third green stage 39.758
SRR8316900Third green stage 107.208
SRR8316901Third green stage 103.166
SRR8316898Complete white stage 55.152
SRR8316899Complete white stage 140.417
SRR8316903Complete white stage 92.310
SRR8316902Silver flowering stage62.655
SRR8316904Silver flowering stage82.757
SRR8316905Silver flowering stage42.229
SRR8316906Gold flowering stage 167.990
SRR8316907Gold flowering stage 151.308
SRR8316908Gold flowering stage 165.577
SRP132670SRR6706286Control114.661
SRR6706287Light intensity 50%133.819
SRR6706288Light intensity 20%141.460
CNP0000432CNS0095592Slightly white alabastrum(diploid) 170.068
CNS0095593Slightly white alabastrum(diploid) 274.953
CNS0095594Slightly white alabastrum(diploid) 365.779
CNS0095595Whole white alabastrum(diploid) 265.167
CNS0095596Whole white alabastrum(diploid) 359.412
CNS0095597Whole white alabastrum(diploid) 463.493
CNS0095598Silvery flower (diploied) 180.429
CNS0095599Silvery flower (diploied) 281.445
CNS0095600Silvery flower (diploied) 3117.572
CNS0095601Golden flower (diploid) 171.282
CNS0095602Golden flower (diploid) 2103.967
CNS0095603Golden flower (diploid) 398.968
CNS0095604Slightly white alabastrum(tetraploid) 170.974
CNS0095605Slightly white alabastrum(tetraploid) 262.072
CNS0095606Slightly white alabastrum(tetraploid) 3118.781
CNS0095607Whole white alabastrum(tetraploid) 146.490
CNS0095608Whole white alabastrum(tetraploid) 245.602
CNS0095609Whole white alabastrum(tetraploid) 397.881
CNS0095610Silvery flower (tetraploid) 1140.792
CNS0095611Silvery flower (tetraploid) 2137.411
CNS0095612Silvery flower (tetraploid) 3118.440
CNS0095613Golden flower (tetraploid) 1102.060
CNS0095614Golden flower (tetraploid) 2117.092
CNS0095615Golden flower (tetraploid) 3149.206
CRA001975CRR073297Stem 1112.207
CRR073298Stem 2106.203
CRR073299Stem 3112.771
CRR073300Leaf 1135.810
CRR073301Leaf 2121.194
CRR073302Leaf 3112.738
CRR073303Juvenile bud 1136.795
CRR073304Juvenile bud 2111.996
CRR073305Juvenile bud 3137.181
CRR073306Third green 174.995
CRR073307Third green 260.160
CRR073308Third green 372.851
CRR073309Second white 186.200
CRR073310Second white 288.499
CRR073311Second white 375.143
CRR073312Silver flowering 172.259
CRR073313Silver flowering 269.168
CRR073314Silver flowering 362.510
CRR073315Gold flowering 150.740
CRR073316Gold flowering 278.678
CRR073317Gold flowering 346.936
CRR073318Tawny withering 178.394
CRR073319Tawny withering 268.260
CRR073320Tawny withering 379.697