Gene detail

Detail information of GWHGAAZE017383

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_010249522.1	0	PREDICTED: uncharacterized protein LOC104592067 isoform X2 [Nelumbo nucifera]
Swissprot	tr\|P42158\|KC1D_ARATH	4E-56	Casein kinase I isoform delta-like
trEMBL	tr\|F6HYA9\|F6HYA9_VITVI	0	Putative uncharacterized protein {ECO:0000313\|EMBL:CCB59432.1}
TAIR10	AT2G25760.1	0	Protein kinase family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000005	gene	5436796	5441652	-
GWHAAZE00000005	mRNA	5436796	5441652	-
GWHAAZE00000005	exon	5436796	5436941	-
GWHAAZE00000005	exon	5437279	5437330	-
GWHAAZE00000005	exon	5437570	5437758	-
GWHAAZE00000005	exon	5437852	5438009	-
GWHAAZE00000005	exon	5438106	5438196	-
GWHAAZE00000005	exon	5438353	5438527	-
GWHAAZE00000005	exon	5438668	5438798	-
GWHAAZE00000005	exon	5438931	5439149	-
GWHAAZE00000005	exon	5439236	5439365	-
GWHAAZE00000005	exon	5439479	5439545	-
GWHAAZE00000005	exon	5439626	5439720	-
GWHAAZE00000005	exon	5440725	5440796	-
GWHAAZE00000005	exon	5440908	5440963	-
GWHAAZE00000005	exon	5441078	5441147	-
GWHAAZE00000005	exon	5441234	5441307	-
GWHAAZE00000005	exon	5441420	5441542	-
GWHAAZE00000005	exon	5441650	5441652	-
GWHAAZE00000005	CDS	5441650	5441652	-
GWHAAZE00000005	CDS	5441420	5441542	-
GWHAAZE00000005	CDS	5441234	5441307	-
GWHAAZE00000005	CDS	5441078	5441147	-
GWHAAZE00000005	CDS	5440908	5440963	-
GWHAAZE00000005	CDS	5440725	5440796	-
GWHAAZE00000005	CDS	5439626	5439720	-
GWHAAZE00000005	CDS	5439479	5439545	-
GWHAAZE00000005	CDS	5439236	5439365	-
GWHAAZE00000005	CDS	5438931	5439149	-
GWHAAZE00000005	CDS	5438668	5438798	-
GWHAAZE00000005	CDS	5438353	5438527	-
GWHAAZE00000005	CDS	5438106	5438196	-
GWHAAZE00000005	CDS	5437852	5438009	-
GWHAAZE00000005	CDS	5437570	5437758	-
GWHAAZE00000005	CDS	5437279	5437330	-
GWHAAZE00000005	CDS	5436796	5436941	-

Transcript Sequence
>GWHTAAZE017403 ATGGTTTATGTTGGTGGTTCCCCTGGTTACAAAGTAGAAAAGAAGATTGGTAAGGGAGGCTTTGGACAAGTTTATATAGGTCATCGTGCTGCTTCACTTTTTGGGACTGAAAGAGGACCTGCTGAAGTAGCCCTAAAATTTGAGCACCGAAGTAGTAAAGGATGCACTTATGGACCGCCGTATGAGTGGCAAGTTTACAACACCCTTAGTGGCAATCATGGTGTACCACGGGTACACTACAAGGGCCAGCAAAATGATTATTATATCATGGTTATGGATCTACTTGGACCAAGCTTGTGGGATGTTTGGAATAATAATTCGCATGCGTTGTCCACTGAAATGGTAGCATGCATTGGCATTGAAGCAATATCTATATTGGAGAAGATGCACTCTAAAGGGTATGTGCACGGGGATGTAAAGCCTGAGAACTTTTTGCTTGGGACACCAGGGACTACTGATGAGAAAAAACTATTTTTAGTTGATCTTGGACTAGCTACTAAATGGAAAGACATTTCAACTGGTCTGCATGTTGATTATGACCAGAGGCCTGATGTTTTCAGGGGAACAGTTCGCTATGCTAGTGTACATGCTCATTTAGGCAGAACAGGCAGCAGGAGAGATGATTTAGAATCTCTTGCTTACACACTCATTTTCCTTCTCCGAGGTCGGCTCCCATGGCAAGGATACCAGGGTGAAAACAAAGGGTTTCTTGTTTGCAAGAAGAAGATGGCAACATCTCCGGAGACTTTGTGTAGCTGCTGCCCAGCCCCTTTTAGACTGTTTGTGGATTATGTGGTGAACTTGAAGTTCGATGAGGAACCTAATTATGCGAAATATATTTCCCTGTTTGACGGGATAGTTGGTCCAAATCCAGATATCAGGCCCATTAACACAGATGGAGCACAGAAGGTTGGTCATAAGAGAGGCCGGTTGACTTTGGAGGAGGAGGAAGATGAACAACCCAAGAAGAAGGTTCGTATGGGTATGCCTGCTACACAATGGATTAGCATTTACAATGCCCGTCGACCAATGAAGCAAAGATATCACTATAATGTGGCTGATGCGAGGCTTGCTCAACACATTGAGAAAGGAAACGAAGATGGCTTATTTATCAGTAGCGTAGCTTCTTGTCAAAACTTGTGGGCACTGATCATGGATGCTGGCACTGGCTTTACTTCCCAAGTTTATGAACTATCGCCCTATTTTCTCCACAAGGAATGGATTATGGAGCAATGGGAAAAGAATTACTATATTAGTGCGATAGCAGGAGCTACAAATGGGAGTTCGCTTGTAATAATGTCTAAGGGTACACAGTATGTGCAGCAATCGTACAAAGTTAGCGATTCATTTCCTTTCAAGTGGATAAATAAAAAATGGAAGGAGGGCTTTTATGTAACTTCAATGGCCACCTCAGGGAGTAGATGGGGAATTGTTATGTCTCGTGGTGCAGGATTCTCAGACCAGGTTGTGGAACTAGATTTTCTTTACCCTAGTGAAGGTATTCATAGGCGATGGGATTACGGATATCGTATAACTGCTACAGCAGCTACATGGGACCAGGCAGCTCTAATTTTAAGCGTGCCAAGAAGAAAGCCCGCAGATGAAACACAGGAGACTCTTCGTACTTCTGCTTTTCCTAGTACACATGTTAAGTATCCGGTTTTGGAACCCTGCAAAGCCTGGATGTCAAAAAAGCGGCATGAAGCTTCATATTTCCTTTTCTTCGCTTTGTTTGTTAGTTTTCCTAGTGTGCAATGTTTTGGGGAATTTGATCGTGATGGTAGGGCTGCAAACATGGCTGAAATTGCAGCTGGCCCAGAGATCGTTGACCCGCAGAGTGTTCCATTTTGA

Network for GWHGAAZE017383

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00069.26	Pkinase	10	241	8.00E-17

Protein Sequence

Gene family

Gene family	subfamily
Protein Kinases Family	CK1_CK1-Pl

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006468	biological_process	protein phosphorylation
GO:0004672	molecular_function	protein kinase activity
GO:0005524	molecular_function	ATP binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	62.915
	SRR3591706	second leaf	22.730
	SRR3591707	mature leaf	30.300
	SRR3591708	Shoot apex	49.552
	SRR3591709	Stem	54.593
	SRR3591710	White floral bud	53.506
	SRR3591711	White flower	47.672
	SRR3591712	Green floral bud	48.754
	SRR3591713	Yellow flower	37.670
SRP173429	SRR8316895	Juvenile bud stage	24.417
	SRR8316896	Juvenile bud stage	38.925
	SRR8316897	Juvenile bud stage	16.848
	SRR8316894	Third green stage	15.776
	SRR8316900	Third green stage	44.607
	SRR8316901	Third green stage	37.152
	SRR8316898	Complete white stage	17.932
	SRR8316899	Complete white stage	49.727
	SRR8316903	Complete white stage	30.871
	SRR8316902	Silver flowering stage	17.715
	SRR8316904	Silver flowering stage	24.705
	SRR8316905	Silver flowering stage	10.707
	SRR8316906	Gold flowering stage	36.220
	SRR8316907	Gold flowering stage	35.807
	SRR8316908	Gold flowering stage	36.204
SRP132670	SRR6706286	Control	31.606
	SRR6706287	Light intensity 50%	36.637
	SRR6706288	Light intensity 20%	34.986
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	25.679
	CNS0095593	Slightly white alabastrum(diploid) 2	24.249
	CNS0095594	Slightly white alabastrum(diploid) 3	24.819
	CNS0095595	Whole white alabastrum(diploid) 2	26.116
	CNS0095596	Whole white alabastrum(diploid) 3	25.308
	CNS0095597	Whole white alabastrum(diploid) 4	28.705
	CNS0095598	Silvery flower (diploied) 1	32.551
	CNS0095599	Silvery flower (diploied) 2	26.847
	CNS0095600	Silvery flower (diploied) 3	42.157
	CNS0095601	Golden flower (diploid) 1	28.522
	CNS0095602	Golden flower (diploid) 2	43.442
	CNS0095603	Golden flower (diploid) 3	39.825
	CNS0095604	Slightly white alabastrum(tetraploid) 1	36.561
	CNS0095605	Slightly white alabastrum(tetraploid) 2	29.144
	CNS0095606	Slightly white alabastrum(tetraploid) 3	54.776
	CNS0095607	Whole white alabastrum(tetraploid) 1	33.317
	CNS0095608	Whole white alabastrum(tetraploid) 2	29.715
	CNS0095609	Whole white alabastrum(tetraploid) 3	36.550
	CNS0095610	Silvery flower (tetraploid) 1	43.053
	CNS0095611	Silvery flower (tetraploid) 2	39.281
	CNS0095612	Silvery flower (tetraploid) 3	31.470
	CNS0095613	Golden flower (tetraploid) 1	17.597
	CNS0095614	Golden flower (tetraploid) 2	31.858
	CNS0095615	Golden flower (tetraploid) 3	29.287
CRA001975	CRR073297	Stem 1	39.868
	CRR073298	Stem 2	36.228
	CRR073299	Stem 3	31.661
	CRR073300	Leaf 1	37.776
	CRR073301	Leaf 2	34.203
	CRR073302	Leaf 3	23.803
	CRR073303	Juvenile bud 1	27.298
	CRR073304	Juvenile bud 2	18.810
	CRR073305	Juvenile bud 3	42.384
	CRR073306	Third green 1	14.948
	CRR073307	Third green 2	11.091
	CRR073308	Third green 3	13.038
	CRR073309	Second white 1	10.150
	CRR073310	Second white 2	10.347
	CRR073311	Second white 3	10.290
	CRR073312	Silver flowering 1	9.189
	CRR073313	Silver flowering 2	7.856
	CRR073314	Silver flowering 3	7.281
	CRR073315	Gold flowering 1	14.575
	CRR073316	Gold flowering 2	22.019
	CRR073317	Gold flowering 3	14.889
	CRR073318	Tawny withering 1	35.541
	CRR073319	Tawny withering 2	22.831
	CRR073320	Tawny withering 3	31.035