Gene detail

Detail information of GWHGAAZE017386

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_009802675.1	1.3721E-139	PREDICTED: GATA transcription factor 12 [Nicotiana sylvestris]
Swissprot	tr\|O82632\|GATA9_ARATH	4E-81	GATA transcription factor 9
trEMBL	tr\|F6HYB5\|F6HYB5_VITVI	2E-138	Putative uncharacterized protein {ECO:0000313\|EMBL:CCB59438.1}
TAIR10	AT4G32890.1	4E-66	GATA transcription factor 9

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000005	gene	5517018	5518687	+
GWHAAZE00000005	mRNA	5517018	5518687	+
GWHAAZE00000005	exon	5517018	5517350	+
GWHAAZE00000005	exon	5517843	5518687	+
GWHAAZE00000005	CDS	5517018	5517350	+
GWHAAZE00000005	CDS	5517843	5518490	+
GWHAAZE00000005	three_prime_UTR	5518491	5518687	+

Transcript Sequence
>GWHTAAZE017406 ATGGAGTCAGCGGACTTTTTCGTCGGCGGCTACTTCGGTTGTGCCGGAGATAAGCAATTCCCGTCGGAAACACGTTACTTGGACCAAAAACCACTCGACAACAACAATCAATTCACCATTGATGACCTCCTCGATTTCTCCAATGAGGATGAAGTAATGACCGACTCTTTTTTCGACAGTATCACCGGTAATTCAGCTAATTCTTCCACCATCACTGTCATCGACAGCTGTAATTCCTCCGTTTCCGGTAACGAACAGTCTCAATTCTCCGGCATCATCAGGTCCCGGAGCTTCACTGACTCTCAATTATCCGGCGGTGAACTCTTTGTTCCGCACGACGATTTGGCAGAGCTTGAATGGCTGTCGAATTTCGTGGAAGAATCATTCTCAAGCGATGACATGCAAAATATGCAATTAATCTCCGCCACAAAAGCACCCACCGACACCTCCTGCTCACAAACCACACCAGAAACCGCCACGAACCGAAATAACAACTCCCCTATCTTTCAAACCGACGTGTCAGTCCCTGGCAAAGCCCGCAGCAAACGCTCACGCGCCGCCCCCTGCGATTGGTCCTCCCGTCTCCTTCTCCTCTCCCCAGGGACCAATGACAAAACCCTCACCACAATGCCGTCGAGGAAGAGAGAGGTTAATGAAACTTCAGTCCGGAAATGCCTTCACTGTGGGTCCGATAAGACCCCGCAATGGAGGACTGGCCCAATGGGCCCGAAGACACTGTGCAACGCTTGTGGGGTCCGTTACAAGTCGGGTCGGTTGGTACCCGAATACCGACCAGCTTCGAGCCCGACGTTTGTGCCGGCAAAGCACTCAAACTCGCACCGGAAGGTTCTGGAGCTCCGGAGACAGAAGGAGCTCCAGTGTGCACAGCACCAACAGTTCATTAGTCAAAGCTCCATTTTCGGCGTAACTAACGGTGACGATTACTTGATAAGTGGTCCCGATTTCAGGCACGTGATTTGATGTGTGCTGGTGTATTTGATCTGGGTGGGCCTATGTGGTTAACGATGAATTTTCTAAAAGGGAATTTGTCGTTGTTGTTTTTTTTTTTTCCCCCCAACTAATTTGCTATGTTTTTAGACGTTTCAGTTATGAGGGTAGATGAAAATAGAACTAGGTTGAAAAAAGGGCGGGAGAAGCTTGTTGATTTAATTTTAGAA

Network for GWHGAAZE017386

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00320.28	GATA	225	258	2.80E-15

Protein Sequence

Gene family

Gene family	subfamily
Transcription Factors Family	C2C2-GATA

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006355	biological_process	regulation of transcription, DNA-templated
GO:0045893	biological_process	positive regulation of transcription, DNA-templated
GO:0005634	cellular_component	nucleus
GO:0008270	molecular_function	zinc ion binding
GO:0043565	molecular_function	sequence-specific DNA binding
GO:0003677	molecular_function	DNA binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	28.615
	SRR3591706	second leaf	12.746
	SRR3591707	mature leaf	1.960
	SRR3591708	Shoot apex	11.741
	SRR3591709	Stem	25.844
	SRR3591710	White floral bud	1.747
	SRR3591711	White flower	0.102
	SRR3591712	Green floral bud	12.978
	SRR3591713	Yellow flower	0.000
SRP173429	SRR8316895	Juvenile bud stage	10.970
	SRR8316896	Juvenile bud stage	8.886
	SRR8316897	Juvenile bud stage	5.830
	SRR8316894	Third green stage	7.214
	SRR8316900	Third green stage	25.333
	SRR8316901	Third green stage	23.218
	SRR8316898	Complete white stage	4.676
	SRR8316899	Complete white stage	28.835
	SRR8316903	Complete white stage	5.238
	SRR8316902	Silver flowering stage	0.377
	SRR8316904	Silver flowering stage	0.737
	SRR8316905	Silver flowering stage	0.310
	SRR8316906	Gold flowering stage	0.137
	SRR8316907	Gold flowering stage	0.259
	SRR8316908	Gold flowering stage	0.086
SRP132670	SRR6706286	Control	31.925
	SRR6706287	Light intensity 50%	28.745
	SRR6706288	Light intensity 20%	28.277
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	11.400
	CNS0095593	Slightly white alabastrum(diploid) 2	18.007
	CNS0095594	Slightly white alabastrum(diploid) 3	11.607
	CNS0095595	Whole white alabastrum(diploid) 2	13.459
	CNS0095596	Whole white alabastrum(diploid) 3	17.787
	CNS0095597	Whole white alabastrum(diploid) 4	13.569
	CNS0095598	Silvery flower (diploied) 1	2.219
	CNS0095599	Silvery flower (diploied) 2	1.568
	CNS0095600	Silvery flower (diploied) 3	2.161
	CNS0095601	Golden flower (diploid) 1	1.625
	CNS0095602	Golden flower (diploid) 2	0.910
	CNS0095603	Golden flower (diploid) 3	0.939
	CNS0095604	Slightly white alabastrum(tetraploid) 1	19.290
	CNS0095605	Slightly white alabastrum(tetraploid) 2	21.939
	CNS0095606	Slightly white alabastrum(tetraploid) 3	31.975
	CNS0095607	Whole white alabastrum(tetraploid) 1	11.427
	CNS0095608	Whole white alabastrum(tetraploid) 2	13.654
	CNS0095609	Whole white alabastrum(tetraploid) 3	20.590
	CNS0095610	Silvery flower (tetraploid) 1	0.173
	CNS0095611	Silvery flower (tetraploid) 2	0.570
	CNS0095612	Silvery flower (tetraploid) 3	0.428
	CNS0095613	Golden flower (tetraploid) 1	0.038
	CNS0095614	Golden flower (tetraploid) 2	0.032
	CNS0095615	Golden flower (tetraploid) 3	0.030
CRA001975	CRR073297	Stem 1	18.389
	CRR073298	Stem 2	19.956
	CRR073299	Stem 3	19.074
	CRR073300	Leaf 1	34.915
	CRR073301	Leaf 2	41.661
	CRR073302	Leaf 3	32.964
	CRR073303	Juvenile bud 1	49.036
	CRR073304	Juvenile bud 2	26.448
	CRR073305	Juvenile bud 3	65.202
	CRR073306	Third green 1	0.575
	CRR073307	Third green 2	1.251
	CRR073308	Third green 3	0.531
	CRR073309	Second white 1	0.307
	CRR073310	Second white 2	0.235
	CRR073311	Second white 3	0.000
	CRR073312	Silver flowering 1	0.000
	CRR073313	Silver flowering 2	0.000
	CRR073314	Silver flowering 3	0.080
	CRR073315	Gold flowering 1	2.613
	CRR073316	Gold flowering 2	3.546
	CRR073317	Gold flowering 3	4.362
	CRR073318	Tawny withering 1	37.306
	CRR073319	Tawny withering 2	24.356
	CRR073320	Tawny withering 3	53.141