Detail information of GWHGAAZE017391


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_010654642.10PREDICTED: zinc phosphodiesterase ELAC protein 2 [Vitis vinifera]
trEMBLtr|F6HYC8|F6HYC8_VITVI0Putative uncharacterized protein {ECO:0000313|EMBL:CCB59451.1}
TAIR10AT3G16260.10tRNAse Z4

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000005gene55967195608159-
GWHAAZE00000005mRNA55967195608159-
GWHAAZE00000005exon55967195597036-
GWHAAZE00000005exon55993415599968-
GWHAAZE00000005exon56000695600463-
GWHAAZE00000005exon56008135600863-
GWHAAZE00000005exon56009485601131-
GWHAAZE00000005exon56015805601848-
GWHAAZE00000005exon56021635602591-
GWHAAZE00000005exon56027035602746-
GWHAAZE00000005exon56029595603013-
GWHAAZE00000005exon56070065607050-
GWHAAZE00000005exon56074085607497-
GWHAAZE00000005exon56080255608159-
GWHAAZE00000005CDS56080255608159-
GWHAAZE00000005CDS56074085607497-
GWHAAZE00000005CDS56070065607050-
GWHAAZE00000005CDS56029595603013-
GWHAAZE00000005CDS56027035602746-
GWHAAZE00000005CDS56021635602591-
GWHAAZE00000005CDS56015805601848-
GWHAAZE00000005CDS56009485601131-
GWHAAZE00000005CDS56008135600863-
GWHAAZE00000005CDS56000695600463-
GWHAAZE00000005CDS55993415599968-
GWHAAZE00000005CDS55967195597036-
Transcript Sequence

Network for GWHGAAZE017391

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF13691.7Lactamase_B_4501065.40E-17
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K00784rnz RNA transport map03013

Gene Ontology

GO term OntologyName
GO:0008033biological_processtRNA processing

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf17.075
SRR3591706second leaf16.504
SRR3591707mature leaf21.331
SRR3591708Shoot apex23.435
SRR3591709Stem17.302
SRR3591710White floral bud19.824
SRR3591711White flower32.036
SRR3591712Green floral bud20.553
SRR3591713Yellow flower35.489
SRP173429 SRR8316895Juvenile bud stage 11.816
SRR8316896Juvenile bud stage 14.708
SRR8316897Juvenile bud stage 9.304
SRR8316894Third green stage 6.722
SRR8316900Third green stage 23.852
SRR8316901Third green stage 20.537
SRR8316898Complete white stage 6.729
SRR8316899Complete white stage 20.459
SRR8316903Complete white stage 14.633
SRR8316902Silver flowering stage11.128
SRR8316904Silver flowering stage18.335
SRR8316905Silver flowering stage8.388
SRR8316906Gold flowering stage 38.002
SRR8316907Gold flowering stage 31.224
SRR8316908Gold flowering stage 33.118
SRP132670SRR6706286Control17.448
SRR6706287Light intensity 50%18.505
SRR6706288Light intensity 20%20.376
CNP0000432CNS0095592Slightly white alabastrum(diploid) 19.207
CNS0095593Slightly white alabastrum(diploid) 29.759
CNS0095594Slightly white alabastrum(diploid) 39.781
CNS0095595Whole white alabastrum(diploid) 211.998
CNS0095596Whole white alabastrum(diploid) 39.432
CNS0095597Whole white alabastrum(diploid) 49.295
CNS0095598Silvery flower (diploied) 116.176
CNS0095599Silvery flower (diploied) 214.829
CNS0095600Silvery flower (diploied) 340.886
CNS0095601Golden flower (diploid) 116.740
CNS0095602Golden flower (diploid) 237.150
CNS0095603Golden flower (diploid) 337.660
CNS0095604Slightly white alabastrum(tetraploid) 112.060
CNS0095605Slightly white alabastrum(tetraploid) 210.156
CNS0095606Slightly white alabastrum(tetraploid) 321.864
CNS0095607Whole white alabastrum(tetraploid) 17.743
CNS0095608Whole white alabastrum(tetraploid) 27.696
CNS0095609Whole white alabastrum(tetraploid) 319.720
CNS0095610Silvery flower (tetraploid) 131.219
CNS0095611Silvery flower (tetraploid) 237.764
CNS0095612Silvery flower (tetraploid) 334.551
CNS0095613Golden flower (tetraploid) 118.151
CNS0095614Golden flower (tetraploid) 228.630
CNS0095615Golden flower (tetraploid) 334.291
CRA001975CRR073297Stem 120.445
CRR073298Stem 215.728
CRR073299Stem 315.254
CRR073300Leaf 119.741
CRR073301Leaf 215.812
CRR073302Leaf 315.595
CRR073303Juvenile bud 121.207
CRR073304Juvenile bud 215.753
CRR073305Juvenile bud 321.179
CRR073306Third green 19.323
CRR073307Third green 25.626
CRR073308Third green 38.091
CRR073309Second white 125.418
CRR073310Second white 222.480
CRR073311Second white 327.621
CRR073312Silver flowering 126.659
CRR073313Silver flowering 223.545
CRR073314Silver flowering 320.570
CRR073315Gold flowering 120.384
CRR073316Gold flowering 233.985
CRR073317Gold flowering 318.374
CRR073318Tawny withering 113.118
CRR073319Tawny withering 212.873
CRR073320Tawny withering 313.167