Gene detail

Detail information of GWHGAAZE017402

Functional Annotation

Database	Orthologs	Annotation
Nr	XP_008228560.1	PREDICTED: homeobox-leucine zipper protein GLABRA 2 [Prunus mume]
Swissprot	tr\|P46607\|HGL2_ARATH	Homeobox-leucine zipper protein GLABRA 2
trEMBL	tr\|M5WXG0\|M5WXG0_PRUPE	Uncharacterized protein {ECO:0000313\|EMBL:EMJ18359.1}
TAIR10	AT1G79840.1	HD-ZIP IV family of homeobox-leucine zipper protein with lipid-binding START domain

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000005	gene	5805104	5809200	+
GWHAAZE00000005	mRNA	5805104	5809200	+
GWHAAZE00000005	exon	5805104	5805184	+
GWHAAZE00000005	exon	5805276	5805550	+
GWHAAZE00000005	exon	5806064	5806181	+
GWHAAZE00000005	exon	5806287	5806481	+
GWHAAZE00000005	exon	5806604	5806984	+
GWHAAZE00000005	exon	5807142	5807243	+
GWHAAZE00000005	exon	5807343	5807552	+
GWHAAZE00000005	exon	5807697	5807871	+
GWHAAZE00000005	exon	5807952	5808223	+
GWHAAZE00000005	exon	5808621	5808707	+
GWHAAZE00000005	exon	5808832	5809200	+
GWHAAZE00000005	CDS	5805104	5805184	+
GWHAAZE00000005	CDS	5805276	5805550	+
GWHAAZE00000005	CDS	5806064	5806181	+
GWHAAZE00000005	CDS	5806287	5806481	+
GWHAAZE00000005	CDS	5806604	5806984	+
GWHAAZE00000005	CDS	5807142	5807243	+
GWHAAZE00000005	CDS	5807343	5807552	+
GWHAAZE00000005	CDS	5807697	5807871	+
GWHAAZE00000005	CDS	5807952	5808223	+
GWHAAZE00000005	CDS	5808621	5808707	+
GWHAAZE00000005	CDS	5808832	5809200	+

Transcript Sequence
>GWHTAAZE017422 ATGGGCGTTGACATGTCGAATAATCCTCCAACTTCTCGTACCAAAGATTTCTTTGCCTCCCCCGCTCTCTCCCTCAGTCTTGCGGGTATTTTCCGTGATGGAGCTGCGGCAGGTACGGCTGCTGCAGCGGTTGCCAACATGGACGTGGAGGAAGGAGAGGAAGGAAGTGTAGGCGGTAAAGCAGATGAAACTGTGGAGATTAGCAGTGAGAATTCAGGACCCGCCAGATCGCGGTCCGATGATGAATTCGACGGCTATGGAGAGCCCGGGGAAGATGGTGACGATGACAAGAACAAGAAAAAGAAGAGAAAAAAGTATCACAGGCACACTGCTGAGCAAATCAGAGAAATGGAAGCTCTATTCAAAGAGTCACCACATCCAGATGAGAAGCAAAGGCAACAGTTGAGCAAGCAATTAGGCCTTCATCCTAGGCAAGTCAAGTTCTGGTTTCAAAATCGTCGAACCCAAATCAAGGCTATACAGGAACGCCATGAAAATTCTTTGCTTAAAACGGAAATGGATAAAATTCGCGATGAAAATAAGGCCTTAAGAGAGACCATTAAGAAGTCTTGTTGTCCTAATTGCGGCTCTGCTACCTCTAGCAAGGATTCTTCTCTCACCACCGAAGAACATCACCTCCGAATTGAAAATGCCCGTCTCAAATCCGAGGTTGAAAAACTTCGAACCGCTATTGGGAAATGCCTGCCTGGATTATCGCCAACTAGCTCCTCTCGTTCATCGGGAAATGATCAAGAAAATAGAAGCTCTCTGGATTTTTACAGTGGAGTTTTCGGGCTTGAAAGGTCCCGAATTATGGAGATTGTTAATCAAGCAATGGAAGAACTTAAGAAGATGGCTACTGCAGCGGAACCATTATGGATCCAAAGCTTTGAGACTGGTAGAGAGATACTGAATTACGATGAGTACGTAAAACAGTTTTCTATTGAAAGTTCAAGTAACGAGCGACCAAAGAGATCCATTGAGGCCTCGAGAGAGAGTGGAATTGTGTTCATTGATCTCCCTCGGCTAGTCCAAAGTTTCATGGATGTGGACCAATGGAAAGAAATGTTTCCGTGCTTGATCTCAAAGGCAGCTACTGTCGATGTTATCAGTAACGCCGAGGGGGCTAATGGAAACGGAGCTGTTCAATTGATGTTTGCAGAGCTGCAAATGCTAACTCCCATGGTGGCCACAAGAGAAGTGTACTTTGTTCGATCTTGCAAGCAATTGAGTGCTGATCAGTGGGCAATTGTTGACGTCTCTATTGACAAAGTCGAAAATAATATTGATGCGTCTCTACTAAAATGTAGAAAACTCCCATCCGGTTGCATCATTGAGGATAAATCTAATGGCCATTGTAAGGTGATTTGGGTGGAGCACATGGAATGCCAGAAAAGCACAGTTCACTCAATGTACCGCTCATTCGTTAACAGTGGTCTAGCATTTGGCGCAAAGCACTGGATCGCTACACTGCAGCTGCAGTGTGAGCGTCTAGTGTTCTTCATGGCAACAAATGTACCCACAAAGGATTCAAGTGGTGTAGCCACACTTGCCGGGAGAAAAAGCATTTTGAAACTGGCACAAAGAATGACATGGAGTTTTTGCCGAGCACTTGGAGCATCAAGCTACCATACATGGAATAAGGTCCCTAGTAAAACAGGAGATGATCTAAGGGTGGCTTCTAGGAAGAACTTAAATGATCCTGGTGAACCTCTTGGGGTGATTTTGTGTGCTGTTTCATCTGTTTGGTTGCCAGTCTCTCACCAAGCCCTATTTGATTTCCTAAGAGATGATACCCGGAGAAAGGAGTGGGACATCATGGCTAATGGAGGTCCCGTTCAATCCATTGCAAACTTGGCTAAAGGACAAGACAGAGGCAATGCAGTTAGTGTTCAAACAATGAAATCAAAGGAGAACATGTGGATACTTCAAGATAGCTGCACGAATAGTTACGAGTCAATAGTGGTTTATGCCCCCGTGGATGTAAACGGGATGCAGTCGGTGATGACTGGCTGTGACTCCAGCAATGTGCCAATATTAGCTTCGGGTTTCTCAATTCTACCAGACGGGCTGGAGTCGAGGCCGATGGTGATAACTTCGAGGCCAGAGGAGAAGAGCAGTGAAGGAGGATCTTTGCTTACGATTGCTTTCCAAATCCTTACAAATGACTCTCCCTCAGCTAAACCAACTATGGAGTCTGTTAACACTCTTATATCATGTACATTGCACAATATTAAGACTGGTATGCAGTGTGAAGATGGATAA

Network for GWHGAAZE017402

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00046.30	Homeodomain	103	158	4.40E-19
PF01852.20	START	274	497	1.50E-57

Protein Sequence

Gene family

Gene family	subfamily
Transcription Factors Family	HB-HD-ZIP

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006355	biological_process	regulation of transcription, DNA-templated
GO:0008289	molecular_function	lipid binding
GO:0003677	molecular_function	DNA binding
GO:0043565	molecular_function	sequence-specific DNA binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	5.376
	SRR3591706	second leaf	4.207
	SRR3591707	mature leaf	2.696
	SRR3591708	Shoot apex	15.509
	SRR3591709	Stem	9.752
	SRR3591710	White floral bud	41.225
	SRR3591711	White flower	7.444
	SRR3591712	Green floral bud	51.665
	SRR3591713	Yellow flower	1.881
SRP173429	SRR8316895	Juvenile bud stage	29.346
	SRR8316896	Juvenile bud stage	51.961
	SRR8316897	Juvenile bud stage	21.983
	SRR8316894	Third green stage	16.886
	SRR8316900	Third green stage	57.431
	SRR8316901	Third green stage	63.658
	SRR8316898	Complete white stage	15.408
	SRR8316899	Complete white stage	44.536
	SRR8316903	Complete white stage	28.293
	SRR8316902	Silver flowering stage	1.319
	SRR8316904	Silver flowering stage	1.989
	SRR8316905	Silver flowering stage	0.695
	SRR8316906	Gold flowering stage	2.132
	SRR8316907	Gold flowering stage	3.015
	SRR8316908	Gold flowering stage	1.316
SRP132670	SRR6706286	Control	57.869
	SRR6706287	Light intensity 50%	74.244
	SRR6706288	Light intensity 20%	83.045
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	29.126
	CNS0095593	Slightly white alabastrum(diploid) 2	21.863
	CNS0095594	Slightly white alabastrum(diploid) 3	31.073
	CNS0095595	Whole white alabastrum(diploid) 2	40.177
	CNS0095596	Whole white alabastrum(diploid) 3	42.205
	CNS0095597	Whole white alabastrum(diploid) 4	49.866
	CNS0095598	Silvery flower (diploied) 1	12.709
	CNS0095599	Silvery flower (diploied) 2	25.421
	CNS0095600	Silvery flower (diploied) 3	9.318
	CNS0095601	Golden flower (diploid) 1	27.231
	CNS0095602	Golden flower (diploid) 2	11.773
	CNS0095603	Golden flower (diploid) 3	12.298
	CNS0095604	Slightly white alabastrum(tetraploid) 1	53.626
	CNS0095605	Slightly white alabastrum(tetraploid) 2	43.858
	CNS0095606	Slightly white alabastrum(tetraploid) 3	58.609
	CNS0095607	Whole white alabastrum(tetraploid) 1	58.765
	CNS0095608	Whole white alabastrum(tetraploid) 2	62.039
	CNS0095609	Whole white alabastrum(tetraploid) 3	85.403
	CNS0095610	Silvery flower (tetraploid) 1	6.290
	CNS0095611	Silvery flower (tetraploid) 2	7.088
	CNS0095612	Silvery flower (tetraploid) 3	8.909
	CNS0095613	Golden flower (tetraploid) 1	2.051
	CNS0095614	Golden flower (tetraploid) 2	2.003
	CNS0095615	Golden flower (tetraploid) 3	2.254
CRA001975	CRR073297	Stem 1	40.470
	CRR073298	Stem 2	33.953
	CRR073299	Stem 3	24.457
	CRR073300	Leaf 1	85.444
	CRR073301	Leaf 2	58.477
	CRR073302	Leaf 3	56.251
	CRR073303	Juvenile bud 1	66.440
	CRR073304	Juvenile bud 2	103.551
	CRR073305	Juvenile bud 3	38.414
	CRR073306	Third green 1	4.964
	CRR073307	Third green 2	3.862
	CRR073308	Third green 3	3.351
	CRR073309	Second white 1	0.821
	CRR073310	Second white 2	1.174
	CRR073311	Second white 3	1.531
	CRR073312	Silver flowering 1	2.904
	CRR073313	Silver flowering 2	1.413
	CRR073314	Silver flowering 3	1.713
	CRR073315	Gold flowering 1	1.589
	CRR073316	Gold flowering 2	0.855
	CRR073317	Gold flowering 3	2.272
	CRR073318	Tawny withering 1	6.619
	CRR073319	Tawny withering 2	5.580
	CRR073320	Tawny withering 3	3.448