Detail information of GWHGAAZE017403


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrKDP37248.13.0394E-47hypothetical protein JCGZ_06304 [Jatropha curcas]
Swissprottr|P16180|RR17_ARATH9E-4930S ribosomal protein S17, chloroplastic (Precursor)
trEMBLtr|A0A067KQL3|A0A067KQL3_JATCU1E-47Uncharacterized protein {ECO:0000313|EMBL:KDP37248.1}
TAIR10AT1G79850.18E-31ribosomal protein S17

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000005gene58232235823537-
GWHAAZE00000005mRNA58232235823537-
GWHAAZE00000005exon58232235823537-
GWHAAZE00000005CDS58232235823537-
Transcript Sequence

Network for GWHGAAZE017403

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00366.21Ribosomal_S176694.70E-24
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K02961RP-S17, MRPS17, rpsQ Ribosome map03010

Gene Ontology

GO term OntologyName
GO:0006412biological_processtranslation
GO:0005840cellular_componentribosome
GO:0003735molecular_functionstructural constituent of ribosome

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf190.764
SRR3591706second leaf334.797
SRR3591707mature leaf194.278
SRR3591708Shoot apex357.817
SRR3591709Stem119.231
SRR3591710White floral bud141.446
SRR3591711White flower220.759
SRR3591712Green floral bud185.014
SRR3591713Yellow flower327.225
SRP173429 SRR8316895Juvenile bud stage 130.194
SRR8316896Juvenile bud stage 152.111
SRR8316897Juvenile bud stage 84.187
SRR8316894Third green stage 73.713
SRR8316900Third green stage 203.479
SRR8316901Third green stage 199.629
SRR8316898Complete white stage 59.102
SRR8316899Complete white stage 155.407
SRR8316903Complete white stage 111.559
SRR8316902Silver flowering stage80.721
SRR8316904Silver flowering stage86.984
SRR8316905Silver flowering stage57.934
SRR8316906Gold flowering stage 168.223
SRR8316907Gold flowering stage 179.517
SRR8316908Gold flowering stage 190.971
SRP132670SRR6706286Control211.631
SRR6706287Light intensity 50%212.376
SRR6706288Light intensity 20%240.760
CNP0000432CNS0095592Slightly white alabastrum(diploid) 1172.215
CNS0095593Slightly white alabastrum(diploid) 2158.596
CNS0095594Slightly white alabastrum(diploid) 3122.938
CNS0095595Whole white alabastrum(diploid) 2130.393
CNS0095596Whole white alabastrum(diploid) 3160.122
CNS0095597Whole white alabastrum(diploid) 4131.216
CNS0095598Silvery flower (diploied) 1163.232
CNS0095599Silvery flower (diploied) 2193.253
CNS0095600Silvery flower (diploied) 3204.983
CNS0095601Golden flower (diploid) 1184.814
CNS0095602Golden flower (diploid) 2254.327
CNS0095603Golden flower (diploid) 3229.338
CNS0095604Slightly white alabastrum(tetraploid) 1160.531
CNS0095605Slightly white alabastrum(tetraploid) 2163.587
CNS0095606Slightly white alabastrum(tetraploid) 3184.447
CNS0095607Whole white alabastrum(tetraploid) 1108.917
CNS0095608Whole white alabastrum(tetraploid) 2142.945
CNS0095609Whole white alabastrum(tetraploid) 3178.077
CNS0095610Silvery flower (tetraploid) 1207.885
CNS0095611Silvery flower (tetraploid) 2298.228
CNS0095612Silvery flower (tetraploid) 3243.650
CNS0095613Golden flower (tetraploid) 1295.005
CNS0095614Golden flower (tetraploid) 2270.964
CNS0095615Golden flower (tetraploid) 3517.323
CRA001975CRR073297Stem 1127.749
CRR073298Stem 2119.169
CRR073299Stem 3169.713
CRR073300Leaf 1103.850
CRR073301Leaf 2115.231
CRR073302Leaf 3105.173
CRR073303Juvenile bud 1120.954
CRR073304Juvenile bud 2138.753
CRR073305Juvenile bud 3136.182
CRR073306Third green 1107.472
CRR073307Third green 285.920
CRR073308Third green 390.709
CRR073309Second white 1187.037
CRR073310Second white 2106.861
CRR073311Second white 397.897
CRR073312Silver flowering 1165.740
CRR073313Silver flowering 2215.753
CRR073314Silver flowering 3155.101
CRR073315Gold flowering 1240.770
CRR073316Gold flowering 2253.716
CRR073317Gold flowering 3279.484
CRR073318Tawny withering 186.453
CRR073319Tawny withering 285.589
CRR073320Tawny withering 394.222