Gene detail

Detail information of GWHGAAZE017412

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_006465596.1	1.213E-172	PREDICTED: mitochondrial arginine transporter BAC2-like [Citrus sinensis]
Swissprot	tr\|Q9CA93\|BAC2_ARATH	5E-151	Mitochondrial arginine transporter BAC2
trEMBL	tr\|M1BDE1\|M1BDE1_SOLTU	7E-171	Uncharacterized protein {ECO:0000313\|EnsemblPlants:PGSC0003DMT400042642}
TAIR10	AT1G79900.1	3E-120	Mitochondrial substrate carrier family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000005	gene	5915607	5917385	+
GWHAAZE00000005	mRNA	5915607	5917385	+
GWHAAZE00000005	exon	5915607	5915840	+
GWHAAZE00000005	exon	5916687	5917385	+
GWHAAZE00000005	CDS	5915607	5915840	+
GWHAAZE00000005	CDS	5916687	5917385	+

Transcript Sequence
>GWHTAAZE017432 ATGGATTTCTGGCCGGAGTTTCTAGCAAGCAGTTGGGGAAAAGAATTTGTAGCTGGAGGATTTGGGGGCGGAGCCGGTGTTATTGCCGGTTATCCGCTCGACACCCTCAGAATCCGGCAACAGCAAACAGGCGCAGGTTCTGCCTTTAGCATCCTTCGCAATGCCGTAGCTAGCGAAGGACCCCTTTCCCTCTACAGGGGCATGGCCGCACCTCTTGCCTCTGTTACTTTCCAGAATGCCATGGCTTTCCAGATATATGCTATCCTATCACGAGCATTCGACGCATCCCTTCCAGCTACAGAGCCTCCTTCCTACAGGGGCGTTGCTCTAGGAGGAATCGGAACAGGAGCTATACAGAGCCTAATTCTTTCTCCTGTTGAACTAGTTAAAATCCGCCTCCAACTACAAAAGAAAATCCCTGACAAACCTGCACAAGCAGATATTTGCAAAGGTCCAGTAACTGTTGCAAGAACCATAATTAGGAGAGAGGGTTGGCGAGGAATTTACCGAGGTTTAACCATCACTGTACTCAGAGACTCCCCGGCTCATGGAGCTTACTTCTGGACATACGAGTATATGAGGGAGAAACTTCACCCAGGGTGCCGAAAGAGTGGACAAGAGAGCTGCAGAACAATGCTTATAGCAGGAGGACTAGCAGGAGTGGCTAGTTGGATTTGCTGCTACCCTTTGGATGTGATTAAAACAAGACTTCAGGCTCAGTCACCATCTTCGATAAAGTATCACGGCATTGTCGATTGCTTCCGCAAAAGTGTGAAGAACGAGGGGTACAACGTTCTTTGGCGAGGATTAGGGACTGCAGTTGCAAGAGCTTTTGTGGTCAATGGGGCTGTTTTTACTGCTTATGAAACAGCTCTGAGGTTCTTAGTTAACAACAACAACAATCGTGAAAGCATACAAACGGAAACAATCTAA

Network for GWHGAAZE017412

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00153.28	Mito_carr	11	93	5.80E-13
PF00153.28	Mito_carr	109	197	7.40E-20
PF00153.28	Mito_carr	212	298	3.70E-25

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K15109	SLC25A20_29, CACT, CACL, CRC1	Thermogenesis	map04714

Gene Ontology

GO term	Ontology	Name
GO:0055085	biological_process	transmembrane transport
GO:0022857	molecular_function	transmembrane transporter activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	18.310
	SRR3591706	second leaf	4.487
	SRR3591707	mature leaf	6.127
	SRR3591708	Shoot apex	10.299
	SRR3591709	Stem	27.367
	SRR3591710	White floral bud	55.034
	SRR3591711	White flower	61.740
	SRR3591712	Green floral bud	26.178
	SRR3591713	Yellow flower	85.560
SRP173429	SRR8316895	Juvenile bud stage	24.335
	SRR8316896	Juvenile bud stage	28.687
	SRR8316897	Juvenile bud stage	21.894
	SRR8316894	Third green stage	6.736
	SRR8316900	Third green stage	20.400
	SRR8316901	Third green stage	23.370
	SRR8316898	Complete white stage	19.061
	SRR8316899	Complete white stage	32.421
	SRR8316903	Complete white stage	24.090
	SRR8316902	Silver flowering stage	21.051
	SRR8316904	Silver flowering stage	23.316
	SRR8316905	Silver flowering stage	13.618
	SRR8316906	Gold flowering stage	51.320
	SRR8316907	Gold flowering stage	48.687
	SRR8316908	Gold flowering stage	66.607
SRP132670	SRR6706286	Control	26.050
	SRR6706287	Light intensity 50%	25.919
	SRR6706288	Light intensity 20%	25.545
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	15.369
	CNS0095593	Slightly white alabastrum(diploid) 2	12.146
	CNS0095594	Slightly white alabastrum(diploid) 3	11.315
	CNS0095595	Whole white alabastrum(diploid) 2	11.368
	CNS0095596	Whole white alabastrum(diploid) 3	16.224
	CNS0095597	Whole white alabastrum(diploid) 4	15.191
	CNS0095598	Silvery flower (diploied) 1	13.491
	CNS0095599	Silvery flower (diploied) 2	28.456
	CNS0095600	Silvery flower (diploied) 3	52.588
	CNS0095601	Golden flower (diploid) 1	43.762
	CNS0095602	Golden flower (diploid) 2	50.551
	CNS0095603	Golden flower (diploid) 3	49.721
	CNS0095604	Slightly white alabastrum(tetraploid) 1	15.886
	CNS0095605	Slightly white alabastrum(tetraploid) 2	14.209
	CNS0095606	Slightly white alabastrum(tetraploid) 3	19.218
	CNS0095607	Whole white alabastrum(tetraploid) 1	14.932
	CNS0095608	Whole white alabastrum(tetraploid) 2	21.064
	CNS0095609	Whole white alabastrum(tetraploid) 3	23.398
	CNS0095610	Silvery flower (tetraploid) 1	61.548
	CNS0095611	Silvery flower (tetraploid) 2	53.322
	CNS0095612	Silvery flower (tetraploid) 3	65.549
	CNS0095613	Golden flower (tetraploid) 1	69.933
	CNS0095614	Golden flower (tetraploid) 2	66.011
	CNS0095615	Golden flower (tetraploid) 3	129.211
CRA001975	CRR073297	Stem 1	11.823
	CRR073298	Stem 2	14.627
	CRR073299	Stem 3	9.387
	CRR073300	Leaf 1	28.327
	CRR073301	Leaf 2	31.694
	CRR073302	Leaf 3	16.317
	CRR073303	Juvenile bud 1	19.739
	CRR073304	Juvenile bud 2	29.765
	CRR073305	Juvenile bud 3	34.033
	CRR073306	Third green 1	24.418
	CRR073307	Third green 2	19.121
	CRR073308	Third green 3	19.045
	CRR073309	Second white 1	13.421
	CRR073310	Second white 2	22.247
	CRR073311	Second white 3	21.128
	CRR073312	Silver flowering 1	20.990
	CRR073313	Silver flowering 2	17.109
	CRR073314	Silver flowering 3	17.003
	CRR073315	Gold flowering 1	6.665
	CRR073316	Gold flowering 2	8.551
	CRR073317	Gold flowering 3	6.895
	CRR073318	Tawny withering 1	7.358
	CRR073319	Tawny withering 2	8.821
	CRR073320	Tawny withering 3	10.446