Gene detail

Detail information of GWHGAAZE017413

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_009591291.1	1.3219E-178	PREDICTED: probable pyridoxal biosynthesis protein PDX1.2 [Nicotiana tomentosiformis]
Swissprot	tr\|Q9ZNR6\|PDX12_ARATH	2E-160	Probable pyridoxal biosynthesis protein PDX1.2
trEMBL	tr\|M1A3Z1\|M1A3Z1_SOLTU	7E-176	Uncharacterized protein {ECO:0000313\|EnsemblPlants:PGSC0003DMT400014295}
TAIR10	AT3G16050.1	5E-128	pyridoxine biosynthesis 1.2

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000005	gene	5917862	5918764	-
GWHAAZE00000005	mRNA	5917862	5918764	-
GWHAAZE00000005	exon	5917862	5918764	-
GWHAAZE00000005	CDS	5917862	5918764	-

Transcript Sequence
>GWHTAAZE017433 ATGGCTGACGAAGGTGCCGTAACGGTTTACAGCAGCAGCGCCATCACCGACGGCAACAAGAAGAACGTGTTCTCGATCAAAGTCGGATTAGCTCAGATGCTACGTGGCGGTGCTATTTTCGAAGCAACCTCCGTTGAACAAGCGAAGATCGCCGAATCAGCCGGTGCCTGCTGTATCATCGTCTCTGAGCCAATTCGCGGAGGCATTTCTCGTATGGCCGATCCAGAACTGATTAAGGAGATCAAGCGATCGGTATCCGTATCTGTCATGGCGAAAGCTCGTGTAGGTCATTTTGTTGAAGGCCAAATACTCGAAGTGATCGGTGTTGACTACATTGACGAGAGCGAGACTCTGGCCGTTGCCGACGAAGATCACTTCATTAACAAGCATAATTACCGTGTGCCTTTTGTTTGTGGATGCCGAGATCTCGGAGAGGCATTGAGGAGAGTGAGAGAAGGTGCGGCGATGATCAGGACTCAGGGAGATCTATCTGGTTCAGGCAACATTGTGGAGACGGTTCGTAATGTGAGGAAAGTGATGGGAGAGATCAGGGTTCTTACAAACATGGATGAAGATGAAGTGTTCGCGTTTTCAAAGAAGATAGGAGCTCCTTACGATATAGTCGCACAAGTCAAGCAAATGGCCAGGCTGCCCGTGGTGCATTTTGCAGCGGGAGGAATTGTGACACCTGCTGATGCGGCTATGATGATGCAATTGGGCTGCGACGGTGTGTTTGTTGGCTCCGAAATCTTCAACTGCTTGGATCCGTATAAGCGAGTAAGGGCAATTGTGCAGGCTGTTAGAAACTATAATGATCCGGATGTTATGGCAGATGCTTGCTCGGGATTGGACGATGCTATGGGGAGGCTGAATCTCAGGGAGGACGGGATCGAACAGTTTTAG

Network for GWHGAAZE017413

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF01680.18	SOR_SNZ	24	224	4.30E-87

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K06215	pdxS, pdx1	Vitamin B6 metabolism	map00750

Gene Ontology

GO term	Ontology	Name
GO:0042819	biological_process	vitamin B6 biosynthetic process
GO:0042823	biological_process	pyridoxal phosphate biosynthetic process
GO:0003824	molecular_function	catalytic activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	147.092
	SRR3591706	second leaf	18.455
	SRR3591707	mature leaf	16.294
	SRR3591708	Shoot apex	58.992
	SRR3591709	Stem	86.314
	SRR3591710	White floral bud	23.818
	SRR3591711	White flower	17.356
	SRR3591712	Green floral bud	30.605
	SRR3591713	Yellow flower	11.839
SRP173429	SRR8316895	Juvenile bud stage	390.020
	SRR8316896	Juvenile bud stage	831.595
	SRR8316897	Juvenile bud stage	324.307
	SRR8316894	Third green stage	58.601
	SRR8316900	Third green stage	152.126
	SRR8316901	Third green stage	298.424
	SRR8316898	Complete white stage	29.705
	SRR8316899	Complete white stage	174.288
	SRR8316903	Complete white stage	44.291
	SRR8316902	Silver flowering stage	41.961
	SRR8316904	Silver flowering stage	40.481
	SRR8316905	Silver flowering stage	36.940
	SRR8316906	Gold flowering stage	135.789
	SRR8316907	Gold flowering stage	121.003
	SRR8316908	Gold flowering stage	67.087
SRP132670	SRR6706286	Control	71.257
	SRR6706287	Light intensity 50%	65.653
	SRR6706288	Light intensity 20%	58.092
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	58.340
	CNS0095593	Slightly white alabastrum(diploid) 2	84.418
	CNS0095594	Slightly white alabastrum(diploid) 3	76.209
	CNS0095595	Whole white alabastrum(diploid) 2	48.867
	CNS0095596	Whole white alabastrum(diploid) 3	32.051
	CNS0095597	Whole white alabastrum(diploid) 4	48.927
	CNS0095598	Silvery flower (diploied) 1	41.837
	CNS0095599	Silvery flower (diploied) 2	445.111
	CNS0095600	Silvery flower (diploied) 3	304.714
	CNS0095601	Golden flower (diploid) 1	700.186
	CNS0095602	Golden flower (diploid) 2	367.559
	CNS0095603	Golden flower (diploid) 3	362.119
	CNS0095604	Slightly white alabastrum(tetraploid) 1	65.647
	CNS0095605	Slightly white alabastrum(tetraploid) 2	68.225
	CNS0095606	Slightly white alabastrum(tetraploid) 3	134.907
	CNS0095607	Whole white alabastrum(tetraploid) 1	55.362
	CNS0095608	Whole white alabastrum(tetraploid) 2	47.155
	CNS0095609	Whole white alabastrum(tetraploid) 3	93.261
	CNS0095610	Silvery flower (tetraploid) 1	56.793
	CNS0095611	Silvery flower (tetraploid) 2	73.915
	CNS0095612	Silvery flower (tetraploid) 3	40.425
	CNS0095613	Golden flower (tetraploid) 1	49.750
	CNS0095614	Golden flower (tetraploid) 2	66.890
	CNS0095615	Golden flower (tetraploid) 3	27.178
CRA001975	CRR073297	Stem 1	27.685
	CRR073298	Stem 2	23.654
	CRR073299	Stem 3	30.441
	CRR073300	Leaf 1	56.741
	CRR073301	Leaf 2	60.641
	CRR073302	Leaf 3	54.478
	CRR073303	Juvenile bud 1	64.117
	CRR073304	Juvenile bud 2	56.839
	CRR073305	Juvenile bud 3	82.667
	CRR073306	Third green 1	10.902
	CRR073307	Third green 2	13.478
	CRR073308	Third green 3	10.124
	CRR073309	Second white 1	10.050
	CRR073310	Second white 2	11.743
	CRR073311	Second white 3	4.707
	CRR073312	Silver flowering 1	9.340
	CRR073313	Silver flowering 2	10.728
	CRR073314	Silver flowering 3	17.086
	CRR073315	Gold flowering 1	14.154
	CRR073316	Gold flowering 2	17.416
	CRR073317	Gold flowering 3	19.865
	CRR073318	Tawny withering 1	45.937
	CRR073319	Tawny withering 2	57.927
	CRR073320	Tawny withering 3	55.806