Gene detail

Detail information of GWHGAAZE017414

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_009804098.1	0	PREDICTED: kinesin-13A [Nicotiana sylvestris]
Swissprot	tr\|Q940B8\|KIN13_ARATH	4E-180	Kinesin-13A
trEMBL	tr\|K4BMN0\|K4BMN0_SOLLC	0	Kinesin-like protein {ECO:0000256\|RuleBase:RU000394}
TAIR10	AT3G16060.1	0	ATP binding microtubule motor family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000005	gene	5928551	5935418	+
GWHAAZE00000005	mRNA	5928551	5935418	+
GWHAAZE00000005	exon	5928551	5928718	+
GWHAAZE00000005	exon	5928875	5929099	+
GWHAAZE00000005	exon	5930275	5930466	+
GWHAAZE00000005	exon	5930718	5930825	+
GWHAAZE00000005	exon	5931328	5931405	+
GWHAAZE00000005	exon	5931531	5931611	+
GWHAAZE00000005	exon	5931807	5932111	+
GWHAAZE00000005	exon	5932209	5932511	+
GWHAAZE00000005	exon	5933064	5933282	+
GWHAAZE00000005	exon	5933941	5934289	+
GWHAAZE00000005	exon	5934586	5934651	+
GWHAAZE00000005	exon	5935137	5935418	+
GWHAAZE00000005	CDS	5928551	5928718	+
GWHAAZE00000005	CDS	5928875	5929099	+
GWHAAZE00000005	CDS	5930275	5930466	+
GWHAAZE00000005	CDS	5930718	5930825	+
GWHAAZE00000005	CDS	5931328	5931405	+
GWHAAZE00000005	CDS	5931531	5931611	+
GWHAAZE00000005	CDS	5931807	5932111	+
GWHAAZE00000005	CDS	5932209	5932511	+
GWHAAZE00000005	CDS	5933064	5933282	+
GWHAAZE00000005	CDS	5933941	5934289	+
GWHAAZE00000005	CDS	5934586	5934651	+
GWHAAZE00000005	CDS	5935137	5935313	+
GWHAAZE00000005	three_prime_UTR	5935314	5935418	+

Transcript Sequence
>GWHTAAZE017434 ATGAACGCAGTGGGGAGACAACAAGGGCAGAGATCTGGTGCATCGGCGGTGCACCACCAGCGTCAGTACTCCGACAACTTTTTGGAGAACTCGTCTAACGGTCGATGGCTTCAATCTGCTGGTCTTCAGCACCTTCAATCCTCTAATACGTCTCTTCCCCCTCAACAGGACTTTGGCTACTATGGCGGTGGTGGTGGACAAGGTTCGAGATTGTATAAGAATCCTCAAAGGACTTCCAGCGGCGGAAGTGACTTTTTTGCGGATTCGTTGATGCCTCCGGCAAATTCACGATCGTCAATCCAGAGGAAGAACGGTGAAGATCTAGAGCCGGCGAGTGAGTTCAGTCCTGGACTGCTAGATCTCCACTCCTTTGACACTGAGTTACTTACTGAGATTCCTGCCCCTGGCATGTATGATGCTCCTCCCATTCATTCTGCTCGTGGTCGAAGCTTTGATGACTCTGAGCCCTTCTATGGAAACAATAAACAATCTGGCCAAGTTCGTGGTTTGCCAGAGAACAACCTTTTGAAAAGTTTTGCCCAAGACAAAGAGAAGGCTAGCAATGTTGCAAAGATCAAAGTTGTGGTGCGGAAGAGACCGCTAAATAAGAAGGAGCTGGCAAAGAATGAGGAAGACATCATAACTATCGAGACACATTCTAGTTCTCTAACAGTTCACGAGACTAAACTTAAGGTTGACCTGACAGAATACTTGGAAAAGCACGAATTTGTTTTTGATGCTGTGCTGAATGAGGAGGTTTCAAATGATGAGGTTTATCATGAAACTGTGGAGCCCATAGTTCCAATATTTTCCAACGCACAAAAGCGACTTGCTTTGCTTATGGGCAAACAGTACTTCTTCAACTCTCCCTTGAGTTCCAAGTCACTATTTTCTTCGCACGTGTTTCAAAAAAATGCGGACATTTGGGAAAGTCAAGTTTCTTTACAATTACCTGTTCATGCCAATCATTTCAACCCTAATGTTTTCACTTGTTCAGGAAGTGGAAAAACTTATACGATGAAACCGTTGCCCCTTAAAGCATCTAAGGATATCTTGAGGATGATGCACCATACATACCGGAACCAAGGTTTTCAATTGTTTTTCAGTTTCTTTGAGATATATGGTGGAAAACTTTATGATCTCCTCAATGAGCGGAAAAAGCTTTGCATGAGAGAGGATGGTAAACAGCAAGTTTGCATAGTGGGTTTGCAAGAATACAGAGTATCAGATGTGGAGACAATTAAGGAGCTAATCGAGAAAGGATCTGGAACAAGAAGTACTGGCACTACAGGTGCAAATGAGGAATCTTCCCGATCACATGCCATACTTCAACTTGCTATTAAGAGATCCCCTGATGGCAGTGAATCCAAGCCTGCTCGAGTTGTTGGCAAGCTATCCTTCATTGATCTTGCTGGAAGTGAACGTGGTGCAGATACTACAGATAATGACAAACAGACAAGAATGGAAGGTGCCGAGATCAATAAAAGCTTGCTTGCATTAAAGGAATGCATAAGAGCACTTGACAATGACCAGGGCCATATTCCTTTCAGAGGCAGTAAATTGACTGAAGTTCTGAGGGATTCGTTTGTTGGAAACTCACGTACTGTTATGATCTCTTGCATTTCACCGAATGCTGGATCTTGTGAACACACTCTTAACACCCTAAGATATGCTGACAGGGTCAAGAGCCTTTCAAAGGGGAAGAAGGATATATCAACTTCAACCTTAAATCTCAAGGAATCAACAACAGTGCCCTTGTCCTCTGTTTTCCCTGCTTCATCATCAACCTATGAAGATGACAGAGGAGATTCATGGCCCAAACAGACTGATGCAGAGGATTATGATGCATCAGAGGAATTCTATGAGCAAGAGAAGGAATCTCGGAAGAAGAATGGTAGAGTCGAGGCATATGGTTTCTCGAATTCGGAAGACAAAATGAGGAGAGCCAATGGTCAGCCCAAGTGGCAAGAGCCACTGAGATTTGATGCAACCCACTCTCAACCTGATGATTTGACTGCCCTGTTGAAGGACGAGGAAGATCTTGTTAATGCTCACCGGAAACAAGTGGAGGCCACGATGGATATTGTTAGAGAGGAGATGAACATGTTGGTTGAGGCAGAGCAACCAGGAAATCAGCTGGATGATTACGTGTCTAGATTGAACGCTATACTATCTCAGAAGGCTGCTGGCATCCTACAGTTACAGAACAGTTTGGCGCATTTTCAAAGGCGTCTAAAGGAACATAACGTTCTAGTTTCTTCTGGTCGCTAAGTTTTTTTTATTACATTGAATTGTGTATGGAAGTCGGCTGTGATACTCCAGTAGGGACCTGCTGTGATATTAACTTTGGGGTCTCATCAAGTTAGAGGATGTTTT

Network for GWHGAAZE017414

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00225.24	Kinesin	328	563	5.50E-74

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K10393	KIF2_24, MCAK	Axon regeneration	map04361

Gene Ontology

GO term	Ontology	Name
GO:0007018	biological_process	microtubule-based movement
GO:0003777	molecular_function	microtubule motor activity
GO:0005524	molecular_function	ATP binding
GO:0008017	molecular_function	microtubule binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	68.739
	SRR3591706	second leaf	29.100
	SRR3591707	mature leaf	13.491
	SRR3591708	Shoot apex	49.075
	SRR3591709	Stem	31.305
	SRR3591710	White floral bud	10.321
	SRR3591711	White flower	10.131
	SRR3591712	Green floral bud	16.044
	SRR3591713	Yellow flower	5.816
SRP173429	SRR8316895	Juvenile bud stage	23.985
	SRR8316896	Juvenile bud stage	32.883
	SRR8316897	Juvenile bud stage	13.539
	SRR8316894	Third green stage	13.557
	SRR8316900	Third green stage	25.484
	SRR8316901	Third green stage	25.887
	SRR8316898	Complete white stage	7.057
	SRR8316899	Complete white stage	25.898
	SRR8316903	Complete white stage	10.612
	SRR8316902	Silver flowering stage	3.871
	SRR8316904	Silver flowering stage	5.599
	SRR8316905	Silver flowering stage	2.405
	SRR8316906	Gold flowering stage	6.623
	SRR8316907	Gold flowering stage	6.048
	SRR8316908	Gold flowering stage	4.103
SRP132670	SRR6706286	Control	16.302
	SRR6706287	Light intensity 50%	17.277
	SRR6706288	Light intensity 20%	19.210
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	19.384
	CNS0095593	Slightly white alabastrum(diploid) 2	15.663
	CNS0095594	Slightly white alabastrum(diploid) 3	18.752
	CNS0095595	Whole white alabastrum(diploid) 2	12.561
	CNS0095596	Whole white alabastrum(diploid) 3	12.351
	CNS0095597	Whole white alabastrum(diploid) 4	10.504
	CNS0095598	Silvery flower (diploied) 1	10.983
	CNS0095599	Silvery flower (diploied) 2	12.824
	CNS0095600	Silvery flower (diploied) 3	13.998
	CNS0095601	Golden flower (diploid) 1	7.221
	CNS0095602	Golden flower (diploid) 2	11.317
	CNS0095603	Golden flower (diploid) 3	11.257
	CNS0095604	Slightly white alabastrum(tetraploid) 1	24.044
	CNS0095605	Slightly white alabastrum(tetraploid) 2	18.396
	CNS0095606	Slightly white alabastrum(tetraploid) 3	42.366
	CNS0095607	Whole white alabastrum(tetraploid) 1	10.501
	CNS0095608	Whole white alabastrum(tetraploid) 2	8.105
	CNS0095609	Whole white alabastrum(tetraploid) 3	24.395
	CNS0095610	Silvery flower (tetraploid) 1	21.805
	CNS0095611	Silvery flower (tetraploid) 2	19.366
	CNS0095612	Silvery flower (tetraploid) 3	13.775
	CNS0095613	Golden flower (tetraploid) 1	8.342
	CNS0095614	Golden flower (tetraploid) 2	17.264
	CNS0095615	Golden flower (tetraploid) 3	13.189
CRA001975	CRR073297	Stem 1	41.062
	CRR073298	Stem 2	35.107
	CRR073299	Stem 3	38.028
	CRR073300	Leaf 1	31.292
	CRR073301	Leaf 2	29.786
	CRR073302	Leaf 3	25.900
	CRR073303	Juvenile bud 1	26.440
	CRR073304	Juvenile bud 2	24.703
	CRR073305	Juvenile bud 3	34.958
	CRR073306	Third green 1	5.013
	CRR073307	Third green 2	6.384
	CRR073308	Third green 3	8.913
	CRR073309	Second white 1	2.252
	CRR073310	Second white 2	3.791
	CRR073311	Second white 3	3.306
	CRR073312	Silver flowering 1	2.155
	CRR073313	Silver flowering 2	2.681
	CRR073314	Silver flowering 3	2.005
	CRR073315	Gold flowering 1	6.702
	CRR073316	Gold flowering 2	13.378
	CRR073317	Gold flowering 3	6.466
	CRR073318	Tawny withering 1	39.710
	CRR073319	Tawny withering 2	24.262
	CRR073320	Tawny withering 3	45.190