Gene detail

Detail information of GWHGAAZE017427

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	CDY68002.1	5.6554E-160	BnaA08g30100D [Brassica napus]
Swissprot	tr\|Q9C827\|COB22_ARATH	2E-158	Coatomer subunit beta'-2
trEMBL	tr\|M4CH59\|M4CH59_BRARP	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:Bra003542.1-P}
TAIR10	AT1G79990.1	0	structural molecules

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000005	gene	6121373	6132546	+
GWHAAZE00000005	mRNA	6121373	6132546	+
GWHAAZE00000005	exon	6121373	6121737	+
GWHAAZE00000005	exon	6122964	6123190	+
GWHAAZE00000005	exon	6124970	6125043	+
GWHAAZE00000005	exon	6130705	6130725	+
GWHAAZE00000005	exon	6130825	6130886	+
GWHAAZE00000005	exon	6131035	6131089	+
GWHAAZE00000005	exon	6131184	6131220	+
GWHAAZE00000005	exon	6131303	6131628	+
GWHAAZE00000005	exon	6131836	6131967	+
GWHAAZE00000005	exon	6132072	6132220	+
GWHAAZE00000005	exon	6132317	6132385	+
GWHAAZE00000005	exon	6132471	6132546	+
GWHAAZE00000005	five_prime_UTR	6121373	6121513	+
GWHAAZE00000005	CDS	6121514	6121737	+
GWHAAZE00000005	CDS	6122964	6123190	+
GWHAAZE00000005	CDS	6124970	6125043	+
GWHAAZE00000005	CDS	6130705	6130725	+
GWHAAZE00000005	CDS	6130825	6130886	+
GWHAAZE00000005	CDS	6131035	6131089	+
GWHAAZE00000005	CDS	6131184	6131220	+
GWHAAZE00000005	CDS	6131303	6131628	+
GWHAAZE00000005	CDS	6131836	6131967	+
GWHAAZE00000005	CDS	6132072	6132220	+
GWHAAZE00000005	CDS	6132317	6132385	+
GWHAAZE00000005	CDS	6132471	6132546	+

Transcript Sequence
>GWHTAAZE017447 CAGTGATTTGTACATAACTATTTATCCTTCAGAATAACTAGGGTTTTGAAATTATGTTGTTATTAAGTCTATAATAATAATAAAAACGCCTTGGTGTTTTGGGGAATCGATAATTGGATTCTTGGGAAAGAGGTTTAAGTCATGTTCTATGGAGCAGCAGTGTGGGATCCTTGGCTCATTGTTGCCCAAATTGTGTGCATTCAGTGTTTATACTATATAACCCTTGGAGTTCTATTGGCAATTCTTATTGGTACTCGCGTATCTCGAATGAGTTTGGTGTATTTCTTTGATTACGCCACTCTTACTGCTTCTACTTTCACTGGTTGCTGCGTCATTGCTTCATTTATTCTCAGCTCTTTTGCCGCAACTGGTTATTTGCTTTATTTGATTGAGAGGGCAAAGAAGTGCTTAGATTTCTCTGCCACTCTCTACATTATCCATCTTTTTATATGCATAGCATATGGAGGTTGGCCTTTGTCTGTAACATGGTGGGTTGTGAATGGTACTGGACTTGCCGTGATGGCTTCCTTAGGAGAATATTTGTGTATAAAACGTGAATTGAGAGAAATTCCCTTACCAAGATACCGTTCAAGTTCCTCGGACAAATATTCAATTAATCTCAATTCCTCGTTTCGATTTGCAGAATATAGGGTGCGTGTGTTTCAGTCTTTCCCGGTGGAAATTGAGAAAGTATTTGAACAACGATCTGAGAGAGTTAAGTCTGTAGATTTACATCCAACCGAACCATGGATTCTAACAAGTTTATACTCGGGAACTCTCTGTATTTGGAATTACGAATCTCAAGTAATGGAGAAGTCTATCAAAATCACTGAATCACCAATAAGGTCAGCAAAGTTTATAGTACGAAAAGAATGGATTATTGCTGGATCCGATGACAAGTTTGTGCGCGTATATAATTACAACACAATGGAAAAGGTTACAGAATTTGAAGCGCACGAGGATTATATCAGGTCTCTTGCCGTGCATCCAAACCGTCCATTTGTTCTTTCAGCAGCTGATGACAGGCTCATTAAGCTGTGGGATTGGGAGAAAAATTGGTTATGTGCTCAGATCTTTGAAGGACATGACCATTATGTTATGCAGGTGGCGTTTAATCCAATTGACACCAACACCTTTGCAAGTGTGTCACTTGACTCCAAAATTAAGATGTGGAACCTTGACTCGCCTAATCCAGATTTCACTCTGGAGAGGCATTCTAAAGGGATAAATTGTGTTGATTTCTTCACTGCTGGTGATAAATCATACCTGGTCACTGGTTCTGATGATTTTACTGCTATGGTTTGGGACTATCAAACTAAAACTTGCGTCCAAACTCTAGAAGGTCACACGCACAATGTCTCTGCGTTATGTGTTCATCCAGAATTTCCAATTATAGTTACCGGATCTGAAGATGGGACCGTTCGTATATGGCAGGCAACAACTTATGGGTTTGAAAAAACACTTCAATATGAACTTGGAAGAGTTTGGGCTTTTGGGTCAATGAAGAATTCACCACAAATTGTAATTGGCTTTGATGAAGGAACCATTGTGGGAAAAGTTACTTGTTCTCGCAGCTGGGAACCTTCTAGTTAA

Network for GWHGAAZE017427

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF09801.10	SYS1	4	145	6.80E-42
PF00400.33	WD40	265	301	4.40E-06
PF00400.33	WD40	308	345	0.18
PF00400.33	WD40	353	389	0.00015
PF00400.33	WD40	394	430	2.20E-08

Protein Sequence

Gene family

Gene family	subfamily
Ubiquitin Family	DWD

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0005515	molecular_function	protein binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	13.801
	SRR3591706	second leaf	6.200
	SRR3591707	mature leaf	20.761
	SRR3591708	Shoot apex	6.393
	SRR3591709	Stem	59.678
	SRR3591710	White floral bud	17.785
	SRR3591711	White flower	37.506
	SRR3591712	Green floral bud	15.506
	SRR3591713	Yellow flower	188.308
SRP173429	SRR8316895	Juvenile bud stage	5.456
	SRR8316896	Juvenile bud stage	8.088
	SRR8316897	Juvenile bud stage	4.533
	SRR8316894	Third green stage	2.423
	SRR8316900	Third green stage	7.419
	SRR8316901	Third green stage	6.609
	SRR8316898	Complete white stage	5.710
	SRR8316899	Complete white stage	15.003
	SRR8316903	Complete white stage	10.047
	SRR8316902	Silver flowering stage	6.079
	SRR8316904	Silver flowering stage	7.152
	SRR8316905	Silver flowering stage	2.130
	SRR8316906	Gold flowering stage	25.714
	SRR8316907	Gold flowering stage	14.896
	SRR8316908	Gold flowering stage	16.249
SRP132670	SRR6706286	Control	4.974
	SRR6706287	Light intensity 50%	3.623
	SRR6706288	Light intensity 20%	3.147
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	11.630
	CNS0095593	Slightly white alabastrum(diploid) 2	13.608
	CNS0095594	Slightly white alabastrum(diploid) 3	14.692
	CNS0095595	Whole white alabastrum(diploid) 2	12.824
	CNS0095596	Whole white alabastrum(diploid) 3	8.449
	CNS0095597	Whole white alabastrum(diploid) 4	15.602
	CNS0095598	Silvery flower (diploied) 1	35.253
	CNS0095599	Silvery flower (diploied) 2	28.164
	CNS0095600	Silvery flower (diploied) 3	18.318
	CNS0095601	Golden flower (diploid) 1	44.376
	CNS0095602	Golden flower (diploid) 2	74.538
	CNS0095603	Golden flower (diploid) 3	75.437
	CNS0095604	Slightly white alabastrum(tetraploid) 1	8.912
	CNS0095605	Slightly white alabastrum(tetraploid) 2	7.999
	CNS0095606	Slightly white alabastrum(tetraploid) 3	8.945
	CNS0095607	Whole white alabastrum(tetraploid) 1	9.411
	CNS0095608	Whole white alabastrum(tetraploid) 2	11.761
	CNS0095609	Whole white alabastrum(tetraploid) 3	7.601
	CNS0095610	Silvery flower (tetraploid) 1	13.374
	CNS0095611	Silvery flower (tetraploid) 2	11.461
	CNS0095612	Silvery flower (tetraploid) 3	10.412
	CNS0095613	Golden flower (tetraploid) 1	22.998
	CNS0095614	Golden flower (tetraploid) 2	22.093
	CNS0095615	Golden flower (tetraploid) 3	14.208
CRA001975	CRR073297	Stem 1	2.074
	CRR073298	Stem 2	2.725
	CRR073299	Stem 3	1.827
	CRR073300	Leaf 1	2.132
	CRR073301	Leaf 2	2.393
	CRR073302	Leaf 3	2.402
	CRR073303	Juvenile bud 1	1.596
	CRR073304	Juvenile bud 2	1.031
	CRR073305	Juvenile bud 3	1.663
	CRR073306	Third green 1	0.903
	CRR073307	Third green 2	1.337
	CRR073308	Third green 3	0.999
	CRR073309	Second white 1	4.848
	CRR073310	Second white 2	5.521
	CRR073311	Second white 3	4.770
	CRR073312	Silver flowering 1	12.762
	CRR073313	Silver flowering 2	11.051
	CRR073314	Silver flowering 3	14.320
	CRR073315	Gold flowering 1	6.269
	CRR073316	Gold flowering 2	8.671
	CRR073317	Gold flowering 3	10.130
	CRR073318	Tawny withering 1	35.236
	CRR073319	Tawny withering 2	50.451
	CRR073320	Tawny withering 3	11.947