Gene detail

Detail information of GWHGAAZE017428

Functional Annotation

Database	Orthologs	Annotation
Nr	EYU24681.1	hypothetical protein MIMGU_mgv1a000997mg [Erythranthe guttata]
Swissprot	tr\|Q9C827\|COB22_ARATH	Coatomer subunit beta'-2
trEMBL	tr\|A0A022Q9P9\|A0A022Q9P9_ERYGU	Uncharacterized protein {ECO:0000313\|EMBL:EYU24681.1}
TAIR10	AT1G52360.1	Coatomer, beta' subunit

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000005	gene	6150570	6163567	+
GWHAAZE00000005	mRNA	6150570	6163567	+
GWHAAZE00000005	exon	6150570	6150728	+
GWHAAZE00000005	exon	6150979	6150999	+
GWHAAZE00000005	exon	6151107	6151168	+
GWHAAZE00000005	exon	6151843	6151897	+
GWHAAZE00000005	exon	6153255	6153291	+
GWHAAZE00000005	exon	6153416	6153741	+
GWHAAZE00000005	exon	6153830	6153961	+
GWHAAZE00000005	exon	6154053	6154201	+
GWHAAZE00000005	exon	6154506	6154574	+
GWHAAZE00000005	exon	6154711	6154861	+
GWHAAZE00000005	exon	6154958	6155023	+
GWHAAZE00000005	exon	6155687	6155875	+
GWHAAZE00000005	exon	6156253	6156393	+
GWHAAZE00000005	exon	6156499	6156573	+
GWHAAZE00000005	exon	6156695	6156871	+
GWHAAZE00000005	exon	6156968	6157059	+
GWHAAZE00000005	exon	6157151	6157267	+
GWHAAZE00000005	exon	6157825	6157939	+
GWHAAZE00000005	exon	6158151	6158222	+
GWHAAZE00000005	exon	6158796	6158992	+
GWHAAZE00000005	exon	6159077	6159170	+
GWHAAZE00000005	exon	6161562	6161668	+
GWHAAZE00000005	exon	6161995	6162124	+
GWHAAZE00000005	exon	6162475	6162678	+
GWHAAZE00000005	exon	6162931	6162997	+
GWHAAZE00000005	exon	6163394	6163567	+
GWHAAZE00000005	five_prime_UTR	6150570	6150725	+
GWHAAZE00000005	CDS	6150726	6150728	+
GWHAAZE00000005	CDS	6150979	6150999	+
GWHAAZE00000005	CDS	6151107	6151168	+
GWHAAZE00000005	CDS	6151843	6151897	+
GWHAAZE00000005	CDS	6153255	6153291	+
GWHAAZE00000005	CDS	6153416	6153741	+
GWHAAZE00000005	CDS	6153830	6153961	+
GWHAAZE00000005	CDS	6154053	6154201	+
GWHAAZE00000005	CDS	6154506	6154574	+
GWHAAZE00000005	CDS	6154711	6154861	+
GWHAAZE00000005	CDS	6154958	6155023	+
GWHAAZE00000005	CDS	6155687	6155875	+
GWHAAZE00000005	CDS	6156253	6156393	+
GWHAAZE00000005	CDS	6156499	6156573	+
GWHAAZE00000005	CDS	6156695	6156871	+
GWHAAZE00000005	CDS	6156968	6157059	+
GWHAAZE00000005	CDS	6157151	6157267	+
GWHAAZE00000005	CDS	6157825	6157939	+
GWHAAZE00000005	CDS	6158151	6158222	+
GWHAAZE00000005	CDS	6158796	6158992	+
GWHAAZE00000005	CDS	6159077	6159170	+
GWHAAZE00000005	CDS	6161562	6161668	+
GWHAAZE00000005	CDS	6161995	6162124	+
GWHAAZE00000005	CDS	6162475	6162636	+
GWHAAZE00000005	three_prime_UTR	6162637	6162678	+
GWHAAZE00000005	three_prime_UTR	6162931	6162997	+
GWHAAZE00000005	three_prime_UTR	6163394	6163567	+

Transcript Sequence
>GWHTAAZE017448 ACCGCCTACTTTCGAGTTGGCGAGCAATTAAGATCTCCGCAGCTGTGCCTGAGTTTTCAATTCCATTCACTTCGATCTAACTCGGATCTCTAGGGTTCGTCAACCTTCTCCCAGTCTTCGATTTCATCAAGGGGGACTCGTTTGTAATTTGTAACAATGCCTCTCAGACTCGAAATCAAGAGAAAACTTGCTCAAAGGTCAGAAAGAGTAAAGTCTACAGATCTGCATCCAATAGAGCCATGGCTCCTTGCAAGTTTGTATTCTGGTACCGTTTGCATCTGGAACTACCAGTCTCAGACTATGGCAAAATCTTTTGAGGTCACTGAGTTACCAGTTAGGTCAGCGAAGTTCATTGCACGAAAGCAGTGGGTTGTTGCTGGTGCCGATGACATGTTTATTCGTGTATACAATTACAATACAATGGATAAGGTCAAAGTATTTGAGGCGCACACAGATTATATTAGGTGTGTAGCTGTACATCCTACCCTTCCATATGTGTTGTCATCATCAGATGACATGCTTATAAAGCTTTGGGACTGGGAGAAGGGTTGGCTTTGTACTCAAATTTTTGAGGGTCATTCCCATTATGTCATGCAAGTGACATTTAACCCAAAAGACACCAATACTTTTGCAAGTGCATCCCTTGATCGCACAATAAAGATTTGGAATCTTGGCTCGCCTGATCCAAACTTCACATTGGATGCACATTTGAAAGGGGTAAATTGTGTAGATTATTTCACAGGAGGTGATAAACCATATCTAATCACTGGTTCTGATGATCACACAGCCAAGGTGTGGGATTATCAAACCAAAAGTTGTGTCCAGACGCTGGAAGGCCACACACACAATGTTTCTGCTGTATGTTTTCATCCTGAACTTCCGATAATAATTACAGGTTCTGAAGATGGTACTGTCCGCATATGGCATGCAACTACTTATAGACTCGAGAATACATTAAATTACGGCCTTGAAAGAGTCTGGGCTATAGGATATATGAAAGGTTCGCGACGAGTTGTAATAGGATATGATGAAGGAACCATTATGGTCAAAATTGGTCGAGAGGAACCGGTAGCAAGTATGGACAACAGCGGGAAGATTATATGGGCCAAGCATAATGAAATTCAGACTGTCAACATCAGGAGTGTGGGGGCAGATTATGAGGTTTCTGATGGAGAAAGATTGCCTTTGGCGGTTAAAGAGCTGGGAACCTGTGATCTTTACCCACAAAGCTTAAAGCATAATCCAAATGGGAGGTTTGTTGTTGTTTGTGGAGATGGTGAATACATTATATACACAGCTTTGGCGTGGAGAAATAGATCATTTGGTTCAGCATTGGAAATTGTGTGGTCGTCAGATGGAGAATATGCAGCTAGGGAAAGTACGTCAAAGATTAAAATCTTTAGTAAAACTTTCCAGGAAAAGAAGAGTATTCGTCCAACATTTTCTGCAGAACGTATTTATGGAGGAACCTTATTAGCAATGTGCTCAAATGATTTTATTTGTTTCTACGATTGGGCAGACTGCAGGTTGATTCGACGGATTGATGTTAATGTCAAAAACCTCTACTGGGCTGATAGTGGTGATTTGGTAGCAGTTGCAAGTGATTCATCATTCTACATCTTAAAGTACAATCGTGACGCAGTTTCTGCTCATCTGGACAGTGGAAGATCGGCAGATGATCAAGGCGTCGAAGATGCCTTCGAGCTTCTTTATGAAATAAATGAACGAGTCAGGACTGGAATATGGGTGGGGGATTGTTTCATTTACAACAACTCTTCCTGGAGACTTAATTACTGTGTTGGTGGTGAGGTCACCACAATGTTTCATTTGGATCGGCCTATGTACCTGCTGGGGTATCTAGCTAACCAAAGTAGGGTGTATCTCGTAGACAAAGAGTTCAATGTTATTGGATACACCTTACTTCTCAGCTTGATTGAGTACAAGACACTTGTGATGCGTGGTGACCTGGAACAAGCAAGTCAGGTTCTACCATCGATTCCCAAGGAACATCTCAATAGTGTGGCTCGTTTCTTGGAATCACGAGGAATGATTGAAGACGCTTTGGAAGTTGCCACAGACCCCGATTACAGATTTGAGCTTGCCATACAGCTGGGTAAACTAGAGATTGCCAAGGAAATTGCCACTGTAGCGCAAAGCGAGTCCAAATGGAAGCAGTTGGGTGAATTAGCTATGTCTACTGGAATGATAGAGATGTCAGAGGACTGTCTAAAGCATGCAAATGATTTGAGTGGCTTGTTGCTTCTCTATTCTTCTTTAGGAGATGCTGAAGAAATATCTAAACTTGCTACTATTGCCAAAGAGAACGGGAAAAACAATGTTGCATTCCTTTGTCTATTCATGTTGGGTAAATTAGAAGAGTGCTTGAAGCTGTTAGTTGACAGTAATCGGATACCTGAAGCTGCTTTGATGGCACGATCTTATCTCCCAAGCAAAGTTTCAGACATAGTTGCACTTTGGAGAAAAGATCTCAACAAGGTTAATCAGAAAGCTGCAGATTCTTTGGCTGATCCGGCAGAGTATCCCAATTTGTTTGAGGACTGGCAAGTTGCACTTTCTGTTGAATCTAAAGTTGCGGAGACAAGGGGTACCTATCCAGCTGCAGCTGAGTATGTAGATTATGCTGATAGAATGAATGTCAACCTTGTGGAGGCCTTCAGAAACATGCAAGTTGACGCAGAGAAACCACTTGAAAATGGAGGCTTGGATCATGAGGTTGCTGAACAAAATGGGGAGGGGCATGAAGAGGGTGAAGATGAGGGCCAAGAAGAGGGTGTTGTGGTGGATGCTGACTCTACAGATGGTGCGGTACTCGTTAACGGTAACGAGGCTGAAGAAGAGTGGGGTACGAATAATGAAGAAAATCCGTCAGCCTAAAAGAAATTGGTTGGGCCAGTGAAAATCCTAGTTTTGTTGCTGTGCTTACACCGCGTCACTAGGATCAGTTAAGACAATTGGTTCCTGCTGTATTCAACTCCTCCTAAAGCCATTGGAACACAAGAGCTGCAGTAAGCGGCAGTCCTCAATTTGGAAGCTTTCATTGGAAGATTGCTTCAAAGCAGTGCGTTTTATCAACAACGGTGGCACTATGCTACTCTCACCATGTTTTTGTTATAATCATTTGTAGAAACAAATGTGGCTAGCCTTTTTAGTAACAAAC

Network for GWHGAAZE017428

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00400.33	WD40	91	127	7.40E-06
PF00400.33	WD40	134	171	0.00024
PF00400.33	WD40	177	215	4.90E-06
PF00400.33	WD40	220	256	6.10E-09
PF04053.15	Coatomer_WDAD	319	763	4.80E-164

Protein Sequence

Gene family

Gene family	subfamily
Ubiquitin Family	DWD

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006886	biological_process	intracellular protein transport
GO:0016192	biological_process	vesicle-mediated transport
GO:0030117	cellular_component	membrane coat
GO:0005515	molecular_function	protein binding
GO:0005198	molecular_function	structural molecule activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	135.242
	SRR3591706	second leaf	62.683
	SRR3591707	mature leaf	34.657
	SRR3591708	Shoot apex	69.212
	SRR3591709	Stem	83.841
	SRR3591710	White floral bud	86.629
	SRR3591711	White flower	92.282
	SRR3591712	Green floral bud	106.245
	SRR3591713	Yellow flower	83.660
SRP173429	SRR8316895	Juvenile bud stage	56.480
	SRR8316896	Juvenile bud stage	84.417
	SRR8316897	Juvenile bud stage	38.315
	SRR8316894	Third green stage	36.400
	SRR8316900	Third green stage	98.843
	SRR8316901	Third green stage	95.665
	SRR8316898	Complete white stage	35.257
	SRR8316899	Complete white stage	89.084
	SRR8316903	Complete white stage	65.322
	SRR8316902	Silver flowering stage	38.924
	SRR8316904	Silver flowering stage	55.607
	SRR8316905	Silver flowering stage	23.414
	SRR8316906	Gold flowering stage	79.776
	SRR8316907	Gold flowering stage	76.876
	SRR8316908	Gold flowering stage	78.913
SRP132670	SRR6706286	Control	69.966
	SRR6706287	Light intensity 50%	81.127
	SRR6706288	Light intensity 20%	86.469
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	55.067
	CNS0095593	Slightly white alabastrum(diploid) 2	58.658
	CNS0095594	Slightly white alabastrum(diploid) 3	51.042
	CNS0095595	Whole white alabastrum(diploid) 2	51.145
	CNS0095596	Whole white alabastrum(diploid) 3	50.628
	CNS0095597	Whole white alabastrum(diploid) 4	50.322
	CNS0095598	Silvery flower (diploied) 1	36.816
	CNS0095599	Silvery flower (diploied) 2	37.492
	CNS0095600	Silvery flower (diploied) 3	59.180
	CNS0095601	Golden flower (diploid) 1	30.666
	CNS0095602	Golden flower (diploid) 2	53.774
	CNS0095603	Golden flower (diploid) 3	51.304
	CNS0095604	Slightly white alabastrum(tetraploid) 1	74.524
	CNS0095605	Slightly white alabastrum(tetraploid) 2	63.824
	CNS0095606	Slightly white alabastrum(tetraploid) 3	127.228
	CNS0095607	Whole white alabastrum(tetraploid) 1	55.106
	CNS0095608	Whole white alabastrum(tetraploid) 2	48.938
	CNS0095609	Whole white alabastrum(tetraploid) 3	98.346
	CNS0095610	Silvery flower (tetraploid) 1	77.023
	CNS0095611	Silvery flower (tetraploid) 2	46.585
	CNS0095612	Silvery flower (tetraploid) 3	61.749
	CNS0095613	Golden flower (tetraploid) 1	45.821
	CNS0095614	Golden flower (tetraploid) 2	67.027
	CNS0095615	Golden flower (tetraploid) 3	56.304
CRA001975	CRR073297	Stem 1	82.182
	CRR073298	Stem 2	77.462
	CRR073299	Stem 3	63.167
	CRR073300	Leaf 1	96.979
	CRR073301	Leaf 2	88.289
	CRR073302	Leaf 3	67.120
	CRR073303	Juvenile bud 1	67.358
	CRR073304	Juvenile bud 2	55.175
	CRR073305	Juvenile bud 3	73.298
	CRR073306	Third green 1	43.266
	CRR073307	Third green 2	30.757
	CRR073308	Third green 3	42.398
	CRR073309	Second white 1	33.615
	CRR073310	Second white 2	52.367
	CRR073311	Second white 3	48.323
	CRR073312	Silver flowering 1	44.062
	CRR073313	Silver flowering 2	46.513
	CRR073314	Silver flowering 3	41.097
	CRR073315	Gold flowering 1	17.810
	CRR073316	Gold flowering 2	32.404
	CRR073317	Gold flowering 3	16.006
	CRR073318	Tawny withering 1	76.832
	CRR073319	Tawny withering 2	64.916
	CRR073320	Tawny withering 3	85.485