Detail information of GWHGAAZE017432


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_006343108.15.5129E-171PREDICTED: F-box/kelch-repeat protein At1g80440-like [Solanum tuberosum]
Swissprottr|Q9LMR5|FK126_ARATH2E-124F-box/kelch-repeat protein At1g15670
trEMBLtr|M0ZRN0|M0ZRN0_SOLTU2E-171Uncharacterized protein {ECO:0000313|EnsemblPlants:PGSC0003DMT400006584}
TAIR10AT1G15670.11E-101Galactose oxidase/kelch repeat superfamily protein

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000005gene62409076241977-
GWHAAZE00000005mRNA62409076241977-
GWHAAZE00000005exon62409076241977-
GWHAAZE00000005CDS62409076241977-
Transcript Sequence

Network for GWHGAAZE017432

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00646.34F-box4469.10E-05
PF01344.26Kelch_11672026.80E-07
Protein Sequence

Gene family

Gene familysubfamily
Ubiquitin FamilyF-box

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName
GO:0005515molecular_functionprotein binding

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf0.265
SRR3591706second leaf4.505
SRR3591707mature leaf1.151
SRR3591708Shoot apex1.757
SRR3591709Stem0.333
SRR3591710White floral bud2.302
SRR3591711White flower19.094
SRR3591712Green floral bud2.099
SRR3591713Yellow flower14.358
SRP173429 SRR8316895Juvenile bud stage 3.315
SRR8316896Juvenile bud stage 7.961
SRR8316897Juvenile bud stage 0.990
SRR8316894Third green stage 1.612
SRR8316900Third green stage 1.155
SRR8316901Third green stage 3.154
SRR8316898Complete white stage 2.400
SRR8316899Complete white stage 1.508
SRR8316903Complete white stage 2.702
SRR8316902Silver flowering stage5.003
SRR8316904Silver flowering stage2.778
SRR8316905Silver flowering stage1.435
SRR8316906Gold flowering stage 7.347
SRR8316907Gold flowering stage 9.508
SRR8316908Gold flowering stage 2.282
SRP132670SRR6706286Control2.718
SRR6706287Light intensity 50%1.840
SRR6706288Light intensity 20%1.442
CNP0000432CNS0095592Slightly white alabastrum(diploid) 13.049
CNS0095593Slightly white alabastrum(diploid) 22.798
CNS0095594Slightly white alabastrum(diploid) 33.968
CNS0095595Whole white alabastrum(diploid) 23.388
CNS0095596Whole white alabastrum(diploid) 32.855
CNS0095597Whole white alabastrum(diploid) 43.098
CNS0095598Silvery flower (diploied) 12.415
CNS0095599Silvery flower (diploied) 27.749
CNS0095600Silvery flower (diploied) 310.418
CNS0095601Golden flower (diploid) 18.689
CNS0095602Golden flower (diploid) 27.136
CNS0095603Golden flower (diploid) 37.342
CNS0095604Slightly white alabastrum(tetraploid) 12.905
CNS0095605Slightly white alabastrum(tetraploid) 25.186
CNS0095606Slightly white alabastrum(tetraploid) 32.922
CNS0095607Whole white alabastrum(tetraploid) 13.092
CNS0095608Whole white alabastrum(tetraploid) 23.168
CNS0095609Whole white alabastrum(tetraploid) 31.782
CNS0095610Silvery flower (tetraploid) 112.630
CNS0095611Silvery flower (tetraploid) 24.888
CNS0095612Silvery flower (tetraploid) 30.585
CNS0095613Golden flower (tetraploid) 16.822
CNS0095614Golden flower (tetraploid) 22.711
CNS0095615Golden flower (tetraploid) 30.280
CRA001975CRR073297Stem 11.940
CRR073298Stem 23.218
CRR073299Stem 38.769
CRR073300Leaf 10.724
CRR073301Leaf 21.556
CRR073302Leaf 30.831
CRR073303Juvenile bud 10.327
CRR073304Juvenile bud 20.622
CRR073305Juvenile bud 30.769
CRR073306Third green 14.011
CRR073307Third green 25.198
CRR073308Third green 34.352
CRR073309Second white 14.387
CRR073310Second white 22.964
CRR073311Second white 30.664
CRR073312Silver flowering 10.092
CRR073313Silver flowering 20.316
CRR073314Silver flowering 30.000
CRR073315Gold flowering 12.586
CRR073316Gold flowering 23.029
CRR073317Gold flowering 35.557
CRR073318Tawny withering 10.049
CRR073319Tawny withering 20.338
CRR073320Tawny withering 30.123