Detail information of GWHGAAZE017433


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_008802204.11.9923E-24PREDICTED: 50S ribosomal protein L29, chloroplastic-like [Phoenix dactylifera]
Swissprottr|Q9FJP3|RK29_ARATH1E-2250S ribosomal protein L29, chloroplastic (Precursor)
trEMBLtr|M0TH03|M0TH03_MUSAM5E-24Uncharacterized protein {ECO:0000313|EnsemblPlants:GSMUA_Achr7P12650_001}
TAIR10AT5G65220.11E-18Ribosomal L29 family protein

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000005gene62445656244947+
GWHAAZE00000005mRNA62445656244947+
GWHAAZE00000005exon62445656244614+
GWHAAZE00000005exon62447226244947+
GWHAAZE00000005CDS62445656244614+
GWHAAZE00000005CDS62447226244947+
Transcript Sequence

Network for GWHGAAZE017433

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
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Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K02904RP-L29, rpmC Ribosome map03010

Gene Ontology

GO term OntologyName

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf0.000
SRR3591706second leaf1.805
SRR3591707mature leaf1.380
SRR3591708Shoot apex0.450
SRR3591709Stem0.000
SRR3591710White floral bud0.000
SRR3591711White flower0.000
SRR3591712Green floral bud0.000
SRR3591713Yellow flower0.000
SRP173429 SRR8316895Juvenile bud stage 1.083
SRR8316896Juvenile bud stage 1.752
SRR8316897Juvenile bud stage 0.747
SRR8316894Third green stage 0.956
SRR8316900Third green stage 1.024
SRR8316901Third green stage 1.157
SRR8316898Complete white stage 0.259
SRR8316899Complete white stage 0.378
SRR8316903Complete white stage 0.302
SRR8316902Silver flowering stage0.053
SRR8316904Silver flowering stage0.125
SRR8316905Silver flowering stage0.332
SRR8316906Gold flowering stage 0.159
SRR8316907Gold flowering stage 0.224
SRR8316908Gold flowering stage 0.095
SRP132670SRR6706286Control1.461
SRR6706287Light intensity 50%1.363
SRR6706288Light intensity 20%0.814
CNP0000432CNS0095592Slightly white alabastrum(diploid) 12.787
CNS0095593Slightly white alabastrum(diploid) 21.348
CNS0095594Slightly white alabastrum(diploid) 31.186
CNS0095595Whole white alabastrum(diploid) 22.592
CNS0095596Whole white alabastrum(diploid) 32.124
CNS0095597Whole white alabastrum(diploid) 42.009
CNS0095598Silvery flower (diploied) 13.189
CNS0095599Silvery flower (diploied) 21.460
CNS0095600Silvery flower (diploied) 30.616
CNS0095601Golden flower (diploid) 11.193
CNS0095602Golden flower (diploid) 20.791
CNS0095603Golden flower (diploid) 31.176
CNS0095604Slightly white alabastrum(tetraploid) 10.162
CNS0095605Slightly white alabastrum(tetraploid) 21.862
CNS0095606Slightly white alabastrum(tetraploid) 30.511
CNS0095607Whole white alabastrum(tetraploid) 10.000
CNS0095608Whole white alabastrum(tetraploid) 20.157
CNS0095609Whole white alabastrum(tetraploid) 30.369
CNS0095610Silvery flower (tetraploid) 10.000
CNS0095611Silvery flower (tetraploid) 20.165
CNS0095612Silvery flower (tetraploid) 30.375
CNS0095613Golden flower (tetraploid) 10.000
CNS0095614Golden flower (tetraploid) 20.000
CNS0095615Golden flower (tetraploid) 30.016
CRA001975CRR073297Stem 11.135
CRR073298Stem 21.390
CRR073299Stem 31.009
CRR073300Leaf 10.394
CRR073301Leaf 20.267
CRR073302Leaf 30.851
CRR073303Juvenile bud 10.017
CRR073304Juvenile bud 20.274
CRR073305Juvenile bud 30.166
CRR073306Third green 10.000
CRR073307Third green 20.000
CRR073308Third green 30.000
CRR073309Second white 10.000
CRR073310Second white 20.000
CRR073311Second white 30.000
CRR073312Silver flowering 10.000
CRR073313Silver flowering 20.000
CRR073314Silver flowering 30.000
CRR073315Gold flowering 16.815
CRR073316Gold flowering 23.074
CRR073317Gold flowering 32.930
CRR073318Tawny withering 11.525
CRR073319Tawny withering 20.936
CRR073320Tawny withering 30.931