Detail information of GWHGAAZE017439


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_010249884.11.73859E-78PREDICTED: auxin-responsive protein IAA1 [Nelumbo nucifera]
Swissprottr|P93830|IAA17_ARATH4E-54Auxin-responsive protein IAA17
trEMBLtr|W9SFI1|W9SFI1_9ROSA1E-75Auxin-responsive protein {ECO:0000256|RuleBase:RU004549}
TAIR10AT1G04250.12E-44AUX/IAA transcriptional regulator family protein

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000005gene63365006337466+
GWHAAZE00000005mRNA63365006337466+
GWHAAZE00000005exon63365006336732+
GWHAAZE00000005exon63370016337182+
GWHAAZE00000005exon63373516337466+
GWHAAZE00000005CDS63365006336732+
GWHAAZE00000005CDS63370016337182+
GWHAAZE00000005CDS63373516337466+
Transcript Sequence

Network for GWHGAAZE017439

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF02309.17AUX_IAA961761.80E-34
Protein Sequence

Gene family

Gene familysubfamily
Transcription Factors FamilyAUX/IAA

KEGG pathway

KO Enzyme pathway mapID
K14484IAA Plant hormone signal transduction map04075

Gene Ontology

GO term OntologyName
GO:0005515molecular_functionprotein binding

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf41.962
SRR3591706second leaf29.228
SRR3591707mature leaf9.679
SRR3591708Shoot apex26.766
SRR3591709Stem21.617
SRR3591710White floral bud23.862
SRR3591711White flower53.741
SRR3591712Green floral bud23.218
SRR3591713Yellow flower9.023
SRP173429 SRR8316895Juvenile bud stage 102.149
SRR8316896Juvenile bud stage 103.939
SRR8316897Juvenile bud stage 49.693
SRR8316894Third green stage 29.607
SRR8316900Third green stage 71.694
SRR8316901Third green stage 123.996
SRR8316898Complete white stage 5.049
SRR8316899Complete white stage 117.319
SRR8316903Complete white stage 10.624
SRR8316902Silver flowering stage22.351
SRR8316904Silver flowering stage15.365
SRR8316905Silver flowering stage10.153
SRR8316906Gold flowering stage 22.774
SRR8316907Gold flowering stage 10.153
SRR8316908Gold flowering stage 16.671
SRP132670SRR6706286Control56.731
SRR6706287Light intensity 50%55.243
SRR6706288Light intensity 20%47.096
CNP0000432CNS0095592Slightly white alabastrum(diploid) 180.303
CNS0095593Slightly white alabastrum(diploid) 297.116
CNS0095594Slightly white alabastrum(diploid) 3101.579
CNS0095595Whole white alabastrum(diploid) 2101.423
CNS0095596Whole white alabastrum(diploid) 330.475
CNS0095597Whole white alabastrum(diploid) 475.362
CNS0095598Silvery flower (diploied) 198.656
CNS0095599Silvery flower (diploied) 297.839
CNS0095600Silvery flower (diploied) 339.255
CNS0095601Golden flower (diploid) 168.708
CNS0095602Golden flower (diploid) 243.371
CNS0095603Golden flower (diploid) 345.083
CNS0095604Slightly white alabastrum(tetraploid) 118.652
CNS0095605Slightly white alabastrum(tetraploid) 212.865
CNS0095606Slightly white alabastrum(tetraploid) 340.390
CNS0095607Whole white alabastrum(tetraploid) 18.755
CNS0095608Whole white alabastrum(tetraploid) 26.073
CNS0095609Whole white alabastrum(tetraploid) 321.870
CNS0095610Silvery flower (tetraploid) 127.602
CNS0095611Silvery flower (tetraploid) 215.232
CNS0095612Silvery flower (tetraploid) 33.250
CNS0095613Golden flower (tetraploid) 16.168
CNS0095614Golden flower (tetraploid) 214.240
CNS0095615Golden flower (tetraploid) 33.609
CRA001975CRR073297Stem 184.518
CRR073298Stem 283.691
CRR073299Stem 386.570
CRR073300Leaf 1164.091
CRR073301Leaf 2191.441
CRR073302Leaf 3119.227
CRR073303Juvenile bud 1106.921
CRR073304Juvenile bud 259.119
CRR073305Juvenile bud 391.139
CRR073306Third green 196.753
CRR073307Third green 298.858
CRR073308Third green 370.332
CRR073309Second white 126.334
CRR073310Second white 252.493
CRR073311Second white 328.106
CRR073312Silver flowering 127.138
CRR073313Silver flowering 227.107
CRR073314Silver flowering 325.552
CRR073315Gold flowering 127.295
CRR073316Gold flowering 212.425
CRR073317Gold flowering 35.883
CRR073318Tawny withering 11.917
CRR073319Tawny withering 26.607
CRR073320Tawny withering 33.195