Gene detail

Detail information of GWHGAAZE017452

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	CDO98089.1	0	unnamed protein product [Coffea canephora]
Swissprot	tr\|Q945B6\|AOP1L_ARATH	3E-86	Probable 2-oxoglutarate-dependent dioxygenase AOP1.2
trEMBL	tr\|A0A068TQ90\|A0A068TQ90_COFCA	0	Coffea canephora DH200=94 genomic scaffold, scaffold_2 {ECO:0000313\|EMBL:CDO98089.1}
TAIR10	AT1G52800.1	9E-103	2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000005	gene	6484519	6485997	-
GWHAAZE00000005	mRNA	6484519	6485997	-
GWHAAZE00000005	exon	6484519	6484770	-
GWHAAZE00000005	exon	6485211	6485532	-
GWHAAZE00000005	exon	6485624	6485997	-
GWHAAZE00000005	CDS	6485624	6485997	-
GWHAAZE00000005	CDS	6485211	6485532	-
GWHAAZE00000005	CDS	6484519	6484770	-

Transcript Sequence
>GWHTAAZE017472 ATGGGTTCTCTCACAACGCCTAAACTTCTTGTGGTAGATTTTACCAAAGAAGACTTGAAGCCTGGTACAACTTCTTGGTCCTTAGCGTGCAATGATATAAAGCACGCCCTCGAAAATCATGGTTGCTTTATAGCATTGTACGATAAAATTCCTTCAGATCTTAACAAATCAATTTTTGACGCAGCTGACGAATTGTTTGATCTTCCTACGGAAACCAAAATCCAAAACATTAACGAAAAGCCTTATCATGGGTATGTTGGCCAAATTCCCTTTGTTCCTCTTCACGAAGGCTTGGGCATCGACTATGCCACAACACCAGAGGGTGCTCAAAGTTTCACCAATCTCATGTGGCCTAACGGAAACAAGTCTTTCTGTGAAAGTTCAGTCACATTTTCAAGGACAGTGGCAGAACTTGATCATACGGTCATAAAAATGCTATTTGAGAGTTATGGCGTCGAGAAGTACTGTGACTCTCACATTGATTCAAGCACGTACCTTCTTAGATTCTTGAAATATAGAGCGCCAGAGATGAATGAGACCACTATGGCTTTTCCCTCTCATACAGATAAAAGCTTCTTGACTATACTATATCAAAATCAAGTTTCTGGTTTAGAAATAAGAACGAGGGATGAAGAGTGGATTTCTGTTGAGTACCCTCCTAATTCCTTTGTTGTAATGGCTGGCGATGCATGCAAGGCATGGAGTAATGGTAAAGTACTTTCGCCTAATCATAAAGTCACAATGAACATGTACGGGAAAGAAACAAGATACACCATAGCTTTATTTTCATTCCTCAGCAAGACTGTTCAAGTGCCCGACGAATTTGTGGACGATGAAAACCCGCTACAGTTTAGACCATTTGTGCACGTTGATTTACTCAAGTTCTACGATACAGATCATGGCCGTAGATCACAGAATATTCTCCAAGATTTCTGTGGTACTCTTTGA

Network for GWHGAAZE017452

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation
CFinderModule0306

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF14226.7	DIOX_N	24	87	6.30E-09
PF03171.21	2OG-FeII_Oxy	176	263	2.00E-18

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0055114	biological_process	oxidation-reduction process
GO:0016491	molecular_function	oxidoreductase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	0.000
	SRR3591706	second leaf	0.197
	SRR3591707	mature leaf	0.445
	SRR3591708	Shoot apex	0.000
	SRR3591709	Stem	0.000
	SRR3591710	White floral bud	0.074
	SRR3591711	White flower	0.000
	SRR3591712	Green floral bud	2.062
	SRR3591713	Yellow flower	0.000
SRP173429	SRR8316895	Juvenile bud stage	1.105
	SRR8316896	Juvenile bud stage	0.530
	SRR8316897	Juvenile bud stage	0.828
	SRR8316894	Third green stage	0.290
	SRR8316900	Third green stage	1.691
	SRR8316901	Third green stage	1.462
	SRR8316898	Complete white stage	0.000
	SRR8316899	Complete white stage	0.100
	SRR8316903	Complete white stage	0.000
	SRR8316902	Silver flowering stage	0.000
	SRR8316904	Silver flowering stage	0.000
	SRR8316905	Silver flowering stage	0.000
	SRR8316906	Gold flowering stage	0.000
	SRR8316907	Gold flowering stage	0.000
	SRR8316908	Gold flowering stage	0.000
SRP132670	SRR6706286	Control	0.646
	SRR6706287	Light intensity 50%	0.560
	SRR6706288	Light intensity 20%	0.453
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	0.554
	CNS0095593	Slightly white alabastrum(diploid) 2	0.295
	CNS0095594	Slightly white alabastrum(diploid) 3	3.345
	CNS0095595	Whole white alabastrum(diploid) 2	0.268
	CNS0095596	Whole white alabastrum(diploid) 3	0.566
	CNS0095597	Whole white alabastrum(diploid) 4	0.582
	CNS0095598	Silvery flower (diploied) 1	0.000
	CNS0095599	Silvery flower (diploied) 2	0.236
	CNS0095600	Silvery flower (diploied) 3	0.000
	CNS0095601	Golden flower (diploid) 1	0.000
	CNS0095602	Golden flower (diploid) 2	0.000
	CNS0095603	Golden flower (diploid) 3	0.000
	CNS0095604	Slightly white alabastrum(tetraploid) 1	5.020
	CNS0095605	Slightly white alabastrum(tetraploid) 2	4.380
	CNS0095606	Slightly white alabastrum(tetraploid) 3	6.319
	CNS0095607	Whole white alabastrum(tetraploid) 1	4.514
	CNS0095608	Whole white alabastrum(tetraploid) 2	7.161
	CNS0095609	Whole white alabastrum(tetraploid) 3	25.367
	CNS0095610	Silvery flower (tetraploid) 1	0.094
	CNS0095611	Silvery flower (tetraploid) 2	0.798
	CNS0095612	Silvery flower (tetraploid) 3	0.121
	CNS0095613	Golden flower (tetraploid) 1	0.150
	CNS0095614	Golden flower (tetraploid) 2	0.000
	CNS0095615	Golden flower (tetraploid) 3	0.000
CRA001975	CRR073297	Stem 1	0.294
	CRR073298	Stem 2	0.753
	CRR073299	Stem 3	0.322
	CRR073300	Leaf 1	0.505
	CRR073301	Leaf 2	0.095
	CRR073302	Leaf 3	0.087
	CRR073303	Juvenile bud 1	0.229
	CRR073304	Juvenile bud 2	0.085
	CRR073305	Juvenile bud 3	0.000
	CRR073306	Third green 1	0.000
	CRR073307	Third green 2	0.003
	CRR073308	Third green 3	0.000
	CRR073309	Second white 1	0.000
	CRR073310	Second white 2	0.000
	CRR073311	Second white 3	0.000
	CRR073312	Silver flowering 1	0.000
	CRR073313	Silver flowering 2	0.000
	CRR073314	Silver flowering 3	0.000
	CRR073315	Gold flowering 1	0.000
	CRR073316	Gold flowering 2	0.000
	CRR073317	Gold flowering 3	0.000
	CRR073318	Tawny withering 1	0.000
	CRR073319	Tawny withering 2	0.000
	CRR073320	Tawny withering 3	0.000