Gene detail

Detail information of GWHGAAZE017463

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_002285244.1	1.0749E-111	PREDICTED: V-type proton ATPase subunit c''1 [Vitis vinifera]
Swissprot	tr\|Q9SLA2\|VATO2_ARATH	5E-105	V-type proton ATPase subunit c''2
trEMBL	tr\|D7U0U1\|D7U0U1_VITVI	4E-112	Putative uncharacterized protein {ECO:0000313\|EMBL:CBI36237.3}
TAIR10	AT2G25610.1	6E-76	ATPase, F0/V0 complex, subunit C protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000005	gene	6637617	6640557	+
GWHAAZE00000005	mRNA	6637617	6640557	+
GWHAAZE00000005	exon	6637617	6637729	+
GWHAAZE00000005	exon	6637864	6637941	+
GWHAAZE00000005	exon	6640101	6640271	+
GWHAAZE00000005	exon	6640386	6640557	+
GWHAAZE00000005	CDS	6637617	6637729	+
GWHAAZE00000005	CDS	6637864	6637941	+
GWHAAZE00000005	CDS	6640101	6640271	+
GWHAAZE00000005	CDS	6640386	6640557	+

Transcript Sequence
>GWHTAAZE017483 ATGGTGAGTGCATCGAGTTCTTGGTCACGAGCGTTGGTGCAGATCTCTCCGTATACGTTTTCTGCACTGGGAATTGCCATTGCAATCGGTGTTTCTGTTCTCGGTGCTGCTTGGGGAATCTATATAACTGGTAGTAGTTTAATTGGTGCTGCCATCAAAGCCCCTCGCATTACTTCTAAAAATCTAATCAGTGTCATTTTCTGTGAAGCTGTTGCTATATATGGTGTAATTGTGGCAATCATTCTTCAAACAAAGCTAGAGAGTGTACCTGTATCCCAGATTTATGCACCAGAATCCCTTAGGGCAGGATATGCAATCTTTGCATCCGGGATAATTGTGGGCTTTGCAAACCTTGTCTGCGGGTTGTGTGTTGGAATAATTGGAAGCAGCTGTGCATTGTCAGATGCTCAAAATTCGTCACTTTTTGTGAAGATCCTTGTGATTGAGATCTTTGGTAGCGCACTTGGATTGTTTGGAGTAATTGTGGGGATAATCATGTCGGCTCAAGCAACATGGCCATCTAAGACCGCGTGA

Network for GWHGAAZE017463

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00137.22	ATP-synt_C	23	82	7.50E-15
PF00137.22	ATP-synt_C	107	166	8.40E-10

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K03661	ATPeV0B, ATP6F	Metabolic pathways	map01100
		Oxidative phosphorylation	map00190
		Phagosome	map04145
		Lysosome	map04142
		Synaptic vesicle cycle	map04721

Gene Ontology

GO term	Ontology	Name
GO:1902600	biological_process	proton transmembrane transport
GO:0033177	cellular_component	proton-transporting two-sector ATPase complex, proton-transporting domain
GO:0033179	cellular_component	proton-transporting V-type ATPase, V0 domain
GO:0015078	molecular_function	proton transmembrane transporter activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	127.170
	SRR3591706	second leaf	63.588
	SRR3591707	mature leaf	36.957
	SRR3591708	Shoot apex	91.100
	SRR3591709	Stem	89.191
	SRR3591710	White floral bud	90.126
	SRR3591711	White flower	65.302
	SRR3591712	Green floral bud	131.313
	SRR3591713	Yellow flower	46.352
SRP173429	SRR8316895	Juvenile bud stage	51.200
	SRR8316896	Juvenile bud stage	65.980
	SRR8316897	Juvenile bud stage	35.809
	SRR8316894	Third green stage	28.504
	SRR8316900	Third green stage	103.908
	SRR8316901	Third green stage	98.548
	SRR8316898	Complete white stage	48.230
	SRR8316899	Complete white stage	106.925
	SRR8316903	Complete white stage	64.559
	SRR8316902	Silver flowering stage	50.361
	SRR8316904	Silver flowering stage	56.615
	SRR8316905	Silver flowering stage	25.592
	SRR8316906	Gold flowering stage	68.485
	SRR8316907	Gold flowering stage	81.597
	SRR8316908	Gold flowering stage	76.465
SRP132670	SRR6706286	Control	112.378
	SRR6706287	Light intensity 50%	119.906
	SRR6706288	Light intensity 20%	139.472
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	89.773
	CNS0095593	Slightly white alabastrum(diploid) 2	93.449
	CNS0095594	Slightly white alabastrum(diploid) 3	73.584
	CNS0095595	Whole white alabastrum(diploid) 2	81.465
	CNS0095596	Whole white alabastrum(diploid) 3	95.936
	CNS0095597	Whole white alabastrum(diploid) 4	68.248
	CNS0095598	Silvery flower (diploied) 1	42.116
	CNS0095599	Silvery flower (diploied) 2	58.523
	CNS0095600	Silvery flower (diploied) 3	67.213
	CNS0095601	Golden flower (diploid) 1	42.863
	CNS0095602	Golden flower (diploid) 2	49.346
	CNS0095603	Golden flower (diploid) 3	49.786
	CNS0095604	Slightly white alabastrum(tetraploid) 1	86.038
	CNS0095605	Slightly white alabastrum(tetraploid) 2	85.815
	CNS0095606	Slightly white alabastrum(tetraploid) 3	117.180
	CNS0095607	Whole white alabastrum(tetraploid) 1	52.735
	CNS0095608	Whole white alabastrum(tetraploid) 2	55.772
	CNS0095609	Whole white alabastrum(tetraploid) 3	88.843
	CNS0095610	Silvery flower (tetraploid) 1	62.846
	CNS0095611	Silvery flower (tetraploid) 2	62.576
	CNS0095612	Silvery flower (tetraploid) 3	59.655
	CNS0095613	Golden flower (tetraploid) 1	33.625
	CNS0095614	Golden flower (tetraploid) 2	45.888
	CNS0095615	Golden flower (tetraploid) 3	41.323
CRA001975	CRR073297	Stem 1	83.377
	CRR073298	Stem 2	73.447
	CRR073299	Stem 3	87.501
	CRR073300	Leaf 1	102.142
	CRR073301	Leaf 2	91.490
	CRR073302	Leaf 3	128.175
	CRR073303	Juvenile bud 1	108.890
	CRR073304	Juvenile bud 2	109.766
	CRR073305	Juvenile bud 3	91.420
	CRR073306	Third green 1	79.380
	CRR073307	Third green 2	84.735
	CRR073308	Third green 3	71.052
	CRR073309	Second white 1	96.693
	CRR073310	Second white 2	62.239
	CRR073311	Second white 3	48.336
	CRR073312	Silver flowering 1	49.105
	CRR073313	Silver flowering 2	54.992
	CRR073314	Silver flowering 3	36.332
	CRR073315	Gold flowering 1	56.423
	CRR073316	Gold flowering 2	61.688
	CRR073317	Gold flowering 3	56.442
	CRR073318	Tawny withering 1	76.546
	CRR073319	Tawny withering 2	77.008
	CRR073320	Tawny withering 3	90.044