Gene detail

Detail information of GWHGAAZE017472

Functional Annotation

Database	Orthologs	Annotation
Nr	XP_002517574.1	DNA photolyase, putative [Ricinus communis]
Swissprot	tr\|O48652\|UVR3_ARATH	(6-4)DNA photolyase
trEMBL	tr\|B9RV05\|B9RV05_RICCO	DNA photolyase, putative {ECO:0000313\|EMBL:EEF44738.1}
TAIR10	AT3G15620.1	DNA photolyase family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000005	gene	6789589	6793772	+
GWHAAZE00000005	mRNA	6789589	6793772	+
GWHAAZE00000005	exon	6789589	6789885	+
GWHAAZE00000005	exon	6790120	6790194	+
GWHAAZE00000005	exon	6790275	6790346	+
GWHAAZE00000005	exon	6790560	6790640	+
GWHAAZE00000005	exon	6790790	6790972	+
GWHAAZE00000005	exon	6791046	6791117	+
GWHAAZE00000005	exon	6791351	6791437	+
GWHAAZE00000005	exon	6791518	6791616	+
GWHAAZE00000005	exon	6791702	6791785	+
GWHAAZE00000005	exon	6792210	6792296	+
GWHAAZE00000005	exon	6792447	6792518	+
GWHAAZE00000005	exon	6792606	6792719	+
GWHAAZE00000005	exon	6792988	6793075	+
GWHAAZE00000005	exon	6793166	6793261	+
GWHAAZE00000005	exon	6793468	6793772	+
GWHAAZE00000005	CDS	6789589	6789885	+
GWHAAZE00000005	CDS	6790120	6790194	+
GWHAAZE00000005	CDS	6790275	6790346	+
GWHAAZE00000005	CDS	6790560	6790640	+
GWHAAZE00000005	CDS	6790790	6790972	+
GWHAAZE00000005	CDS	6791046	6791117	+
GWHAAZE00000005	CDS	6791351	6791437	+
GWHAAZE00000005	CDS	6791518	6791616	+
GWHAAZE00000005	CDS	6791702	6791785	+
GWHAAZE00000005	CDS	6792210	6792296	+
GWHAAZE00000005	CDS	6792447	6792518	+
GWHAAZE00000005	CDS	6792606	6792719	+
GWHAAZE00000005	CDS	6792988	6793075	+
GWHAAZE00000005	CDS	6793166	6793261	+
GWHAAZE00000005	CDS	6793468	6793772	+

Transcript Sequence
>GWHTAAZE017492 ATGATGGCGTCGCTGATGTGGTTCAGGAAGGGTCTTCGGATCCATGACAACCCGGCCCTCGATTACGCAGCAGCCAAGGGATCTAATCACCTGTATCCGGTTTTTGTTATCGACCCGCATTACATGGAGCCCGACCCCCTCGGTTTCTCTCCCGGTTCGCGCCTTGCTGGGTTGAACCGTATCCGGTTCTTGCTCGACAGCCTCGTCGATCTCGATGCTAGTCTGGTGAAGTTAGGTTCGCGTTTGTTGGTGCTCAAGGGTAACCCCACCCACGTTTTGATTACTTGCTTGAAACAGATGCACGAGTTAGGGTTTGATTTCCGTAGTTCAGCTCAGCTCACACAAGTTGCTTCCTCGACAAAGCTTGTGAATTGGGACATTAAAAGACTATGCTTTGAGCATGACACAGAGCCATATTATCAGGCTTTAGACAGTGAAGTGAAGAATTATGCTTCTCTATCTGGTATAGAGGTTTTCTCCCCCGTGAGTCATACGCTCTTCAATCCTTCAGATATTATACACAAGAATGCAGGAAGGCCACCTTTGAGTTATCAATCATTTTTGAAGCTAGCTGGGCAACCCTCTTGGGCATCATCCCCCCTCCCAACTAGATGTAATTGCCTTCCTCCTCTTGGAAATGTTGGAAATTGTGAGATTTTTCCAGGTGTTCCATCACTCGGAGAACTTGGCTATGATGACACACCAGAGGATCAATGTCCTCTTTTCAAAGGCGGAGAGTCAGAAGCATTAAGAAGGATGAGAGAATCAATCAATAACAAGGAATGGGTTGCAAACTTTGAGAAACCAAAGGGTGACCCATCTGCATTTCTAAAGCCAGCAACTACTGTTTTGTCTGCATATCTAAAATTTGGTTGTCTCTCTTCCAGGTATTTCTATCAGTGCATACAGGATGTTCTGAAAAGTGTCAAAAAGCACACGTCTCCACCAGTTTCCCTTCTTGGACAGTTGTTATGGAGAGATTTTTTCTACACCGTTGCTTTTGGCACTCCTAATTTTGATCAGATGAGGGGTAATAGAATCTGCAAACAGATACCTTGGAATGATGATGATGAATTGCTAGCAGCTTGGAGAGATGGCAGGACTGGTTTTCCTTGGATTGATGCCATCATGGTCCAGCTTCTGAAGTGGGGTTGGATGCACCATCTTGCACGGCATTGTGTGGCTTGTTTTCTAACTCGTGGAGATCTGTTTCTTCATTGGGAAAAAGGGCGTGATATTTTTGAGAGGCTTCTTATTGATTCAGATTGGTCAATAAATAATGGAAATTGGTTATGGCTTTCTTGTTCATCATTTTTCTACCAGTATAATCGTATCTATTCTCCAATCACTTTTGGGAAGAAATATGATCCTAATGGTGACTATATTAGGCATTTTCTCCCCGTATTGAAAGATATGCCCAAAGAGTATATTTATGAGCCGTGGACAGCTCCTCTAAGCATCCAAACCAGGGCAAATTGCATAGTTGGAAAAGACTATCCAAAACCAGTTGTCTCTCATAATTATGCAAGCAACGAATGCAGGAGGAAGTTAGCTGGATCTTATGAGTTGAACAAAAAATTAAATGGCACTGTTACCGACGATGACCTGCAAAGTTTGAGGAGAAAACTGGAAGAACAGAGTGAAGAGCCTAAACCCAAGAGGCTGAAACAGAAGATGATAAGCTTAGAGCAAGTTTCTGCCCACTCCGACAAAAGAAAATGATTATTAGATGTATATTGTAAAGAAGGTTGATCTATTCCAACCCACTCTTATGTTGAATACTGCATTAAAGCTCATTCCAACCAATCATGA

Network for GWHGAAZE017472

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00875.19	DNA_photolyase	4	100	3.20E-24
PF00875.19	DNA_photolyase	124	191	1.70E-09
PF03441.15	FAD_binding_7	320	516	3.50E-74

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K02295	CRY	Circadian rhythm	map04710

Gene Ontology

GO term	Ontology	Name

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	15.913
	SRR3591706	second leaf	19.814
	SRR3591707	mature leaf	11.011
	SRR3591708	Shoot apex	34.182
	SRR3591709	Stem	21.829
	SRR3591710	White floral bud	11.959
	SRR3591711	White flower	15.932
	SRR3591712	Green floral bud	12.495
	SRR3591713	Yellow flower	10.949
SRP173429	SRR8316895	Juvenile bud stage	19.558
	SRR8316896	Juvenile bud stage	32.140
	SRR8316897	Juvenile bud stage	8.311
	SRR8316894	Third green stage	11.168
	SRR8316900	Third green stage	35.614
	SRR8316901	Third green stage	40.893
	SRR8316898	Complete white stage	19.594
	SRR8316899	Complete white stage	40.457
	SRR8316903	Complete white stage	30.022
	SRR8316902	Silver flowering stage	17.863
	SRR8316904	Silver flowering stage	25.702
	SRR8316905	Silver flowering stage	12.262
	SRR8316906	Gold flowering stage	52.761
	SRR8316907	Gold flowering stage	36.861
	SRR8316908	Gold flowering stage	36.112
SRP132670	SRR6706286	Control	21.427
	SRR6706287	Light intensity 50%	18.861
	SRR6706288	Light intensity 20%	20.791
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	18.039
	CNS0095593	Slightly white alabastrum(diploid) 2	18.204
	CNS0095594	Slightly white alabastrum(diploid) 3	18.712
	CNS0095595	Whole white alabastrum(diploid) 2	18.397
	CNS0095596	Whole white alabastrum(diploid) 3	15.026
	CNS0095597	Whole white alabastrum(diploid) 4	21.972
	CNS0095598	Silvery flower (diploied) 1	20.434
	CNS0095599	Silvery flower (diploied) 2	21.946
	CNS0095600	Silvery flower (diploied) 3	30.658
	CNS0095601	Golden flower (diploid) 1	21.745
	CNS0095602	Golden flower (diploid) 2	21.908
	CNS0095603	Golden flower (diploid) 3	21.964
	CNS0095604	Slightly white alabastrum(tetraploid) 1	18.845
	CNS0095605	Slightly white alabastrum(tetraploid) 2	13.313
	CNS0095606	Slightly white alabastrum(tetraploid) 3	36.982
	CNS0095607	Whole white alabastrum(tetraploid) 1	13.112
	CNS0095608	Whole white alabastrum(tetraploid) 2	15.968
	CNS0095609	Whole white alabastrum(tetraploid) 3	31.053
	CNS0095610	Silvery flower (tetraploid) 1	42.517
	CNS0095611	Silvery flower (tetraploid) 2	32.111
	CNS0095612	Silvery flower (tetraploid) 3	64.949
	CNS0095613	Golden flower (tetraploid) 1	22.363
	CNS0095614	Golden flower (tetraploid) 2	32.036
	CNS0095615	Golden flower (tetraploid) 3	8.369
CRA001975	CRR073297	Stem 1	20.479
	CRR073298	Stem 2	17.243
	CRR073299	Stem 3	13.646
	CRR073300	Leaf 1	34.683
	CRR073301	Leaf 2	27.889
	CRR073302	Leaf 3	20.961
	CRR073303	Juvenile bud 1	29.389
	CRR073304	Juvenile bud 2	25.602
	CRR073305	Juvenile bud 3	31.656
	CRR073306	Third green 1	17.157
	CRR073307	Third green 2	11.121
	CRR073308	Third green 3	14.661
	CRR073309	Second white 1	29.397
	CRR073310	Second white 2	35.390
	CRR073311	Second white 3	33.494
	CRR073312	Silver flowering 1	15.148
	CRR073313	Silver flowering 2	13.894
	CRR073314	Silver flowering 3	14.926
	CRR073315	Gold flowering 1	34.034
	CRR073316	Gold flowering 2	35.767
	CRR073317	Gold flowering 3	18.172
	CRR073318	Tawny withering 1	20.337
	CRR073319	Tawny withering 2	23.846
	CRR073320	Tawny withering 3	19.664