Gene detail

Detail information of GWHGAAZE017473

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_011081184.1	2.06343E-69	PREDICTED: cytochrome c oxidase subunit 5b-1, mitochondrial-like [Sesamum indicum]
Swissprot	tr\|Q9SSB8\|CX5B2_ARATH	1E-56	Cytochrome c oxidase subunit 5b-2, mitochondrial (Precursor)
trEMBL	tr\|K4C7W9\|K4C7W9_SOLLC	2E-68	Uncharacterized protein {ECO:0000313\|EnsemblPlants:Solyc06g067940.2.1}
TAIR10	AT1G80230.1	1E-45	Rubredoxin-like superfamily protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000005	gene	6799246	6803193	+
GWHAAZE00000005	mRNA	6799246	6803193	+
GWHAAZE00000005	exon	6799246	6799402	+
GWHAAZE00000005	exon	6799565	6799653	+
GWHAAZE00000005	exon	6799759	6799809	+
GWHAAZE00000005	exon	6802905	6802971	+
GWHAAZE00000005	exon	6803087	6803193	+
GWHAAZE00000005	CDS	6799246	6799402	+
GWHAAZE00000005	CDS	6799565	6799653	+
GWHAAZE00000005	CDS	6799759	6799809	+
GWHAAZE00000005	CDS	6802905	6802971	+
GWHAAZE00000005	CDS	6803087	6803193	+

Transcript Sequence
>GWHTAAZE017493 ATGTGGAGAAGGCTCTGTACGCAACTCCGAGCTGTTACCCCGTCCCGATCTACCTCTACACCCCGTCGATACATCGACGGCAACATACCACCTTCTTCTTCCTCGCCCTTCCGCCCGACTCTCGCACGTTTATCCCGCCGCTTCTCTTCCGAAGCCGCAGAGAATGTCTTTTCAAAACAGAGAGTTGAAGATGTAGTGCCAATTGCGACTGGTCACGAGCGTGAGGAGCTTGAAGCCGAGCTCCAAGGACGGGACATTCTGGATATAAACTTTCCTGCTGGTCCTTTTGGTACAAAGGAAGAACCAGCTGTTATCAAATCCTATTATGACAAGAGAATTGTTGGATGCCCTGGAGGTGAAGGAGAGGATGAGCATGATGTGGTTTGGTTTTGGCTAGAAAAAGGCAAGCCACATGAGTGCCCAGTGTGCTCACAGTATTTCACGGTGAGTGCAAACTATCTCTTGAATTGA

Network for GWHGAAZE017473

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF01215.20	COX5B	69	149	1.00E-17

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K02265	COX5B	Metabolic pathways	map01100
		Oxidative phosphorylation	map00190
		Cardiac muscle contraction	map04260
		Thermogenesis	map04714

Gene Ontology

GO term	Ontology	Name
GO:0005740	cellular_component	mitochondrial envelope
GO:0004129	molecular_function	cytochrome-c oxidase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	51.395
	SRR3591706	second leaf	28.615
	SRR3591707	mature leaf	32.243
	SRR3591708	Shoot apex	42.915
	SRR3591709	Stem	48.448
	SRR3591710	White floral bud	85.187
	SRR3591711	White flower	69.528
	SRR3591712	Green floral bud	133.435
	SRR3591713	Yellow flower	103.681
SRP173429	SRR8316895	Juvenile bud stage	46.728
	SRR8316896	Juvenile bud stage	86.313
	SRR8316897	Juvenile bud stage	41.131
	SRR8316894	Third green stage	33.624
	SRR8316900	Third green stage	126.836
	SRR8316901	Third green stage	136.667
	SRR8316898	Complete white stage	48.095
	SRR8316899	Complete white stage	94.992
	SRR8316903	Complete white stage	66.163
	SRR8316902	Silver flowering stage	44.232
	SRR8316904	Silver flowering stage	45.122
	SRR8316905	Silver flowering stage	32.802
	SRR8316906	Gold flowering stage	107.065
	SRR8316907	Gold flowering stage	106.919
	SRR8316908	Gold flowering stage	116.580
SRP132670	SRR6706286	Control	119.467
	SRR6706287	Light intensity 50%	125.496
	SRR6706288	Light intensity 20%	135.052
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	76.496
	CNS0095593	Slightly white alabastrum(diploid) 2	70.353
	CNS0095594	Slightly white alabastrum(diploid) 3	74.885
	CNS0095595	Whole white alabastrum(diploid) 2	81.143
	CNS0095596	Whole white alabastrum(diploid) 3	93.132
	CNS0095597	Whole white alabastrum(diploid) 4	80.453
	CNS0095598	Silvery flower (diploied) 1	29.269
	CNS0095599	Silvery flower (diploied) 2	44.375
	CNS0095600	Silvery flower (diploied) 3	58.135
	CNS0095601	Golden flower (diploid) 1	40.226
	CNS0095602	Golden flower (diploid) 2	76.453
	CNS0095603	Golden flower (diploid) 3	70.229
	CNS0095604	Slightly white alabastrum(tetraploid) 1	103.807
	CNS0095605	Slightly white alabastrum(tetraploid) 2	109.895
	CNS0095606	Slightly white alabastrum(tetraploid) 3	43.266
	CNS0095607	Whole white alabastrum(tetraploid) 1	121.708
	CNS0095608	Whole white alabastrum(tetraploid) 2	131.765
	CNS0095609	Whole white alabastrum(tetraploid) 3	87.215
	CNS0095610	Silvery flower (tetraploid) 1	59.518
	CNS0095611	Silvery flower (tetraploid) 2	60.448
	CNS0095612	Silvery flower (tetraploid) 3	71.816
	CNS0095613	Golden flower (tetraploid) 1	69.757
	CNS0095614	Golden flower (tetraploid) 2	71.363
	CNS0095615	Golden flower (tetraploid) 3	80.190
CRA001975	CRR073297	Stem 1	68.359
	CRR073298	Stem 2	64.607
	CRR073299	Stem 3	75.069
	CRR073300	Leaf 1	101.413
	CRR073301	Leaf 2	105.995
	CRR073302	Leaf 3	109.365
	CRR073303	Juvenile bud 1	110.488
	CRR073304	Juvenile bud 2	117.017
	CRR073305	Juvenile bud 3	84.811
	CRR073306	Third green 1	98.967
	CRR073307	Third green 2	101.700
	CRR073308	Third green 3	83.097
	CRR073309	Second white 1	109.536
	CRR073310	Second white 2	92.745
	CRR073311	Second white 3	69.944
	CRR073312	Silver flowering 1	102.854
	CRR073313	Silver flowering 2	120.727
	CRR073314	Silver flowering 3	109.448
	CRR073315	Gold flowering 1	33.138
	CRR073316	Gold flowering 2	33.107
	CRR073317	Gold flowering 3	25.362
	CRR073318	Tawny withering 1	50.000
	CRR073319	Tawny withering 2	64.434
	CRR073320	Tawny withering 3	46.495