Gene detail

Detail information of GWHGAAZE017475

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_009771368.1	0	PREDICTED: periodic tryptophan protein 2 homolog [Nicotiana sylvestris]
Swissprot	tr\|Q3Y8L7\|DAW1_CHLRE	5E-19	Dynein assembly factor with WDR repeat domains 1
trEMBL	tr\|A5BLN0\|A5BLN0_VITVI	0	Putative uncharacterized protein {ECO:0000313\|EMBL:CAN74744.1}
TAIR10	AT1G15440.1	0	periodic tryptophan protein 2

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000005	gene	6816025	6819733	+
GWHAAZE00000005	mRNA	6816025	6819733	+
GWHAAZE00000005	exon	6816025	6817293	+
GWHAAZE00000005	exon	6817538	6817807	+
GWHAAZE00000005	exon	6817907	6817999	+
GWHAAZE00000005	exon	6818087	6818458	+
GWHAAZE00000005	exon	6818600	6818944	+
GWHAAZE00000005	exon	6819118	6819345	+
GWHAAZE00000005	exon	6819563	6819733	+
GWHAAZE00000005	CDS	6816025	6817293	+
GWHAAZE00000005	CDS	6817538	6817807	+
GWHAAZE00000005	CDS	6817907	6817999	+
GWHAAZE00000005	CDS	6818087	6818458	+
GWHAAZE00000005	CDS	6818600	6818944	+
GWHAAZE00000005	CDS	6819118	6819345	+
GWHAAZE00000005	CDS	6819563	6819733	+

Transcript Sequence
>GWHTAAZE017495 ATGAACTTCAGGTTCCAGAACCTCCTCGGAGCTCCGTACAGAGGCGGCAATACCGTCATCGTCAACAACACCCTCTTAATCTCACCCGTCGGTAACCGAATCTCCGTCACCGACCTCATTAAATCCGAAACCATCACCCTTCCCTGTCAAGCTTCCTCCAATATTATCCGCCTCGCCGCCTCGCCCGACGGAGTTTTCCTTCTTGCCGTCGACGAGAACTCCCGTTGCCTCTTCATCAACCTCGTCCGCCGCGCCGTCCTCCATCGCATCTCCTTCAAGAAGCCCGTGGCCGCCGTCAAGTTTAGCCCCGACGGAACCCTAATCGCAGTCGCCGCCGGTAAATTGATCCAGATTTGGAGGTCCCCGGGGTTCAAAAAGGAGTTCTTTCCGTTCGAATTGAGAAGGACTTTTGCAGATTGTAATGATAAGGTAACTGCGGTGGATTGGAGTTTAGATTCTAATTACTTGCTTGTCGGATCCAAGGATTTGACGGCGAGGCTTTTTTGTTTGAAGAAATTGGATGGGATTAATAAGCCTTTTTTGTTTTTAGGTCATAGAGATACAATTGTTGGCGTATTTTTTGGAACTGATAAGAAAACAAATAGGATTTCTAGGGTTTATACTCTGTCACGTGATGGAGCCTTATTTAGCTGGAATTACAGTGGCAGTGATGGTAAAATTGATGAACTGGGAGGGGGAAACTTGGAGCCGGATTCTCCTGGTACCCCAGAGCAAAGGCTAGGTCAAAGTGGGAAAGGTGTTAAGAATGGTAACGTGAAGAAAAGGAAAAATATTGATGGTGGTGATAGGGATGAAGAAAGTGAGTGTTTGTTGCATAGAGGGAAATGGGAATTACAAAAGAAGGATTACTTTATGCAGTCACCAGCTAAGCTGACCGCTTGTGATTACCAGAGGGTTCTTGATCTTGTGGTGGTTGGGTTCTCAAATGGGGTTTTTGGGCTCTACCAAATGCCTGATTTTGTCTGCCTTCACTTGTTGTCAATATCTAGGGAGAAGATTACTACTGCTTGTTTTAACGATCTTGGGAATTGGTTGACGTTTGGATGTGCTAAACTGGGGCAACTGCTTGTGTGGGAGTGGAAATCTGAGAGCTATATATTGAAACAGCAGGGGCATTACTTTGATGTGAATTGTCTTGCATATTCACCAGATTCGCAACTTTTGGCAACCGGAGCAGATGATAACAAAATCAAGGTGATTAGGAATGAAATGATTTCCTGTTTCTTTATTTATGTATGTTGTAGGCTTATAGAAGATTTGTTACAGGTTTGGACTGTTTCATCTGGCTTCTGTTTTGTGACATTCTCTGAGCACACAAATGCGGTCACTGCACTCCATTTTATGGCTAGTAACCAGTGTCTCTTAAGCGCATCTCTGGATGGGACTGTTCGTGCATGGGATCTGTTCCGTTATCGCAATTTTAGGACATTCACTACACCTTCTTCAAAGCAATTTGTTTCTTTAGCATCAGATCAGAGTGGTGAAGTGATTTGTGCTGGAACTCTTGATTCATTTGAGATATATGTTTGGTCGATGAAGACCGGCAGGTTGTTGGATGTTCTTAGTGGTCACGAAGGCCCTGTTCATGGGTTAACATTTTCTCCTACAAATGCAATCCTAGCTTCGTCGTCATGGGACAGAACTGTCCGGTTGTGGGATGTTTTTGAAGGAAAAGGTGCGGTGGAGACGTTTCCCCACACACATGACGTTCTTACTGTTGTTTATCGGCCAGATGGAAAGCAATTGGCTAGCAGCACTTTAGATGGGCAAATCCATTTCTGGGATCCAATTGAAGGATTGTTAATGTTCACAATTGAGGGGCGTAGAGACATCGCTGGAGGGCGTCTAATGACTGATCGTAGATCAGCTGCTAACTCCAGTTCGGGCAAGTGCTTCACCACAATGTGTTATTCTGCTGATGGGTGTTACATATTAGCTGGAGGAAGTAGTAAATACATTTGCATGTATGATGTTGCTGATCAGGTCTTGTTGCGTAGATTTCAAATAACCCACAATCTCTCGTTAGATGGAGTTCTTGACTTCTTGAACTCGAAGAATATGACAGAAGCTGGTCCACTGAATTTAATTGATGATGATAATAGTGATAATGAGGAAGGTGTTGATAAACAAACCCGAGGAAGAACAGGATATGATTTGCCAGGATCACTCCCTAACAATGGGAGGCCCATTGTTCGAACAAAATGCCTGAGAATAGCACCAACTGGCCGGAGTTGGACTGCAGCAACCACCGAAGGCGTTCTAGTTTATTCAATCGATGATTCCTTCATATTTGATCCGACTGACCTTGACATAGATGTTACACCCGAGGCGGTTGATGTGGCACTGAGGGAAAATCAACCAAACAGAGCTTTAATCCTTAGCTTACGGTTAAACGAATATGCCCTTATCAGAGAGTGCATTATTCGTATCAACCAAGCAGACATACCAGCTGTTGTTTCATCAGTCCCTTTCAAATACCTACAAAGGTTAATTGAGGCATTTTCAGAGCTGTTGGAGAACTCCCCGCATCTGGAGCTCATCCTTCGTTGGTGGCAGGAGCTCTGCAAAATGCATGGTCAGTCAATACAGCAGAATTCGAGAAACTTGCGACCTGCTCTGAAATCCTTGGAGAAGGCAATGACCAGATCACATCAGGATTTGGCAGATACATGTTCTTCAAATGAGTATTTGCTTCGATATTTGTGCTCTACAAGCCCCAAGTCATAA

Network for GWHGAAZE017475

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00400.33	WD40	377	406	2.10E-06
PF00400.33	WD40	438	474	0.00053
PF00400.33	WD40	523	560	3.60E-09
PF00400.33	WD40	574	602	0.056
PF04003.13	Utp12	805	910	2.70E-27

Protein Sequence

Gene family

Gene family	subfamily
Ubiquitin Family	DWD

KEGG pathway

KO	Enzyme	pathway	mapID
K14558	PWP2, UTP1	Ribosome biogenesis in eukaryotes	map03008

Gene Ontology

GO term	Ontology	Name
GO:0005515	molecular_function	protein binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	10.538
	SRR3591706	second leaf	7.742
	SRR3591707	mature leaf	8.421
	SRR3591708	Shoot apex	16.759
	SRR3591709	Stem	8.552
	SRR3591710	White floral bud	7.334
	SRR3591711	White flower	13.777
	SRR3591712	Green floral bud	13.466
	SRR3591713	Yellow flower	8.121
SRP173429	SRR8316895	Juvenile bud stage	9.096
	SRR8316896	Juvenile bud stage	12.081
	SRR8316897	Juvenile bud stage	5.727
	SRR8316894	Third green stage	6.476
	SRR8316900	Third green stage	17.459
	SRR8316901	Third green stage	14.164
	SRR8316898	Complete white stage	1.886
	SRR8316899	Complete white stage	12.483
	SRR8316903	Complete white stage	3.418
	SRR8316902	Silver flowering stage	2.659
	SRR8316904	Silver flowering stage	3.463
	SRR8316905	Silver flowering stage	1.651
	SRR8316906	Gold flowering stage	7.386
	SRR8316907	Gold flowering stage	7.749
	SRR8316908	Gold flowering stage	10.171
SRP132670	SRR6706286	Control	15.839
	SRR6706287	Light intensity 50%	15.984
	SRR6706288	Light intensity 20%	18.295
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	7.252
	CNS0095593	Slightly white alabastrum(diploid) 2	7.153
	CNS0095594	Slightly white alabastrum(diploid) 3	6.391
	CNS0095595	Whole white alabastrum(diploid) 2	6.210
	CNS0095596	Whole white alabastrum(diploid) 3	5.656
	CNS0095597	Whole white alabastrum(diploid) 4	4.002
	CNS0095598	Silvery flower (diploied) 1	6.892
	CNS0095599	Silvery flower (diploied) 2	6.594
	CNS0095600	Silvery flower (diploied) 3	7.550
	CNS0095601	Golden flower (diploid) 1	5.183
	CNS0095602	Golden flower (diploid) 2	7.208
	CNS0095603	Golden flower (diploid) 3	6.292
	CNS0095604	Slightly white alabastrum(tetraploid) 1	7.437
	CNS0095605	Slightly white alabastrum(tetraploid) 2	6.266
	CNS0095606	Slightly white alabastrum(tetraploid) 3	17.902
	CNS0095607	Whole white alabastrum(tetraploid) 1	3.158
	CNS0095608	Whole white alabastrum(tetraploid) 2	2.440
	CNS0095609	Whole white alabastrum(tetraploid) 3	12.286
	CNS0095610	Silvery flower (tetraploid) 1	9.526
	CNS0095611	Silvery flower (tetraploid) 2	10.095
	CNS0095612	Silvery flower (tetraploid) 3	5.081
	CNS0095613	Golden flower (tetraploid) 1	3.528
	CNS0095614	Golden flower (tetraploid) 2	8.458
	CNS0095615	Golden flower (tetraploid) 3	4.340
CRA001975	CRR073297	Stem 1	12.391
	CRR073298	Stem 2	10.776
	CRR073299	Stem 3	8.684
	CRR073300	Leaf 1	10.536
	CRR073301	Leaf 2	11.020
	CRR073302	Leaf 3	9.121
	CRR073303	Juvenile bud 1	7.317
	CRR073304	Juvenile bud 2	3.098
	CRR073305	Juvenile bud 3	10.489
	CRR073306	Third green 1	0.857
	CRR073307	Third green 2	0.797
	CRR073308	Third green 3	1.293
	CRR073309	Second white 1	1.465
	CRR073310	Second white 2	2.627
	CRR073311	Second white 3	2.701
	CRR073312	Silver flowering 1	1.456
	CRR073313	Silver flowering 2	1.676
	CRR073314	Silver flowering 3	0.961
	CRR073315	Gold flowering 1	4.450
	CRR073316	Gold flowering 2	6.495
	CRR073317	Gold flowering 3	2.632
	CRR073318	Tawny withering 1	8.459
	CRR073319	Tawny withering 2	6.437
	CRR073320	Tawny withering 3	9.697