Gene detail

Detail information of GWHGAAZE017477

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_010654750.1	0	PREDICTED: WD repeat-containing protein 43 isoform X1 [Vitis vinifera]
trEMBL	tr\|V4RZC8\|V4RZC8_9ROSI	0	Uncharacterized protein {ECO:0000313\|EMBL:ESR40438.1}
TAIR10	AT1G15420.1	8E-41	Without detailed annotation

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000005	gene	6844827	6848318	+
GWHAAZE00000005	mRNA	6844827	6848318	+
GWHAAZE00000005	exon	6844827	6844931	+
GWHAAZE00000005	exon	6845027	6845142	+
GWHAAZE00000005	exon	6845283	6845437	+
GWHAAZE00000005	exon	6845522	6845610	+
GWHAAZE00000005	exon	6845683	6846223	+
GWHAAZE00000005	exon	6846745	6846893	+
GWHAAZE00000005	exon	6847146	6847421	+
GWHAAZE00000005	exon	6847535	6847617	+
GWHAAZE00000005	exon	6847746	6847857	+
GWHAAZE00000005	exon	6847959	6848033	+
GWHAAZE00000005	exon	6848124	6848318	+
GWHAAZE00000005	CDS	6844827	6844931	+
GWHAAZE00000005	CDS	6845027	6845142	+
GWHAAZE00000005	CDS	6845283	6845437	+
GWHAAZE00000005	CDS	6845522	6845610	+
GWHAAZE00000005	CDS	6845683	6846223	+
GWHAAZE00000005	CDS	6846745	6846893	+
GWHAAZE00000005	CDS	6847146	6847421	+
GWHAAZE00000005	CDS	6847535	6847617	+
GWHAAZE00000005	CDS	6847746	6847857	+
GWHAAZE00000005	CDS	6847959	6848033	+
GWHAAZE00000005	CDS	6848124	6848318	+

Transcript Sequence
>GWHTAAZE017497 ATATGGAACACTAGTACCGGAAGTCTGTTGGCAGAATGGAAGCAGTCAGATGGGGATTCTGATGCTAGGTTTTCTTGTATGGCATGTAGCTTCTTCGGAAAGAAGGGTACAAAAGAAAGAAGTGCTTGCTTAGTGGCTCTTGGCACAGAGTATGGGGATGTTTTGGCTATTAATGTTTTCACTGGAGAGGTGAAGTGGAAATCTACTGGATGTCATTCTGGTGGAATTGCTGGTCTTTCCTTTGGGAATAAAGGGCGTAGACTTTATACAGTTGGTTCTAATGGAATGGTATCTGAGATAAAGTCAGGAACCGGAGAAGTAATAAAGGAGTTCAAACTTTCAAAGAAGTCCATCTCTTCATCAGTTTGTTCATGTGATGAGAAAATAGTAGCTTCAACAAGCACTGGGATACGGATATTTAGTATTGAAGATGAAAAAGAACTGCTGAAGTTCTCCACTGATTCGGGGCTCGTGCAATATATATCTACATCTGATGATGCCAAGGTTGTCGTTACATCAGGATTTGGTGAGAGAGACCTTCAAGTATGGAAATGTGGATTGGACACCAAATCTGTAAGCAAAGAAGCTGTTCTTTCTATGAGACATCCTCCAGTGGCAATTGAATGCAAGAATGGTTGTAATGGAGAAGATAGTTCAATCGTCCTCTCAGTTTCGGAGGTCGGTGTAGCTTATATCTGGAACTTGATGACCTCGTTAAAAGAAATAGATCCAACTACAATCACGGTTAATGCTAAAAAGGCTGAAACAGACCTATATAGTAGTGGAAAATCCAGGAAGGGTCGCACTTCGATAGTAGCTGCTAGATTAAATGATATAGAAACGGATGGACAGGTGAAAGTCCTTATTGCTTATGGTTCTATAGATTCTCCCCACTTTGGTTTAGTGGATATTACACGTCCAGGTGAGGATATTGTCATAGCTGCCGGTGAGGAGACTGTGAAAACTGTTACTGCTGTCCAAGAAAATGGGGTTCATGCCGGAAAAGGGTTGGAAGAAGTTGCTACACCAGCCCAGAAGAAAAGGTCGAGTAAGAAACGAGCTGCATCCGATTCAGATTCTGCAAATGCAGAACCTTTAGCTGATAATGGTAAGCCGGTTTTCAAATTTTTTGGTAGGGATGATAAAGAGAAATTTAATAACCCAGATGCTTTTTGTCTGTATGATATAGGTGATAAGGAGCCTATAGATGGGGTTAAAGTTGATAACGATTTAACTGAGCCAACCATGGGCGAAAAACTGGCAAGTTTAAATTTAGTCGAAGATAATGAAACTAAGAGCCAAGAGAAAATAGATTCCTCTCTTCAGATGAAACCTCCAAGTGCTGATTCAGTCCATGTTCTACTTAAGCAAGCATTGCATGCCGATGATCGAGCCCTTTTGTTGGATTGCTTATTTAGAAAAGATGAGAAGATAGTTGCTAATTCAATTACAGTATTGAATCCATCTGATGTTCTCAAGCTTCTAGAGTCCCTCATCTCACTAATTCAATCCAGGGGTGCAGTGTTGGCCTGTGTGATTCCATGGGTTAGAAGCTTACTTGTTCAACATGCTAGCGGAATAATGTCCCAAGAATCTTCGTTGCTTGCTCTCAACTCCTTATATCAGCTCATAGAGTCTAGAAATTCAACTTTTAATGCAACCACTCAACTATCAAGTTGCTTAGACTTGCTTTATGCAGGGACAGTCAATAATGATGAAGTTGATGATGAGAATGAGATAATACCGCCAATTATGTTCGAGGACAAGGATGAAAGTGAGGAAGATGGATCTGAAGAAGAAGAAGATGCCATGGAAACTGATGAAGAAAGCGAAAACCTTGAAATGTTTGGTGATGATAGTGACCTTGAAGGAAGTGGTGGCATGAGTGAAGATTAG

Network for GWHGAAZE017477

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF04003.13	Utp12	463	564	4.90E-13

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K14546	UTP5, WDR43	Ribosome biogenesis in eukaryotes	map03008

Gene Ontology

GO term	Ontology	Name
GO:0005515	molecular_function	protein binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	8.965
	SRR3591706	second leaf	3.079
	SRR3591707	mature leaf	4.899
	SRR3591708	Shoot apex	13.651
	SRR3591709	Stem	7.142
	SRR3591710	White floral bud	4.189
	SRR3591711	White flower	12.756
	SRR3591712	Green floral bud	11.809
	SRR3591713	Yellow flower	6.487
SRP173429	SRR8316895	Juvenile bud stage	8.372
	SRR8316896	Juvenile bud stage	8.446
	SRR8316897	Juvenile bud stage	5.959
	SRR8316894	Third green stage	5.644
	SRR8316900	Third green stage	14.489
	SRR8316901	Third green stage	11.628
	SRR8316898	Complete white stage	1.214
	SRR8316899	Complete white stage	12.177
	SRR8316903	Complete white stage	1.764
	SRR8316902	Silver flowering stage	2.637
	SRR8316904	Silver flowering stage	3.196
	SRR8316905	Silver flowering stage	0.922
	SRR8316906	Gold flowering stage	4.378
	SRR8316907	Gold flowering stage	3.604
	SRR8316908	Gold flowering stage	5.893
SRP132670	SRR6706286	Control	3.958
	SRR6706287	Light intensity 50%	3.968
	SRR6706288	Light intensity 20%	4.971
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	6.947
	CNS0095593	Slightly white alabastrum(diploid) 2	8.234
	CNS0095594	Slightly white alabastrum(diploid) 3	6.613
	CNS0095595	Whole white alabastrum(diploid) 2	5.894
	CNS0095596	Whole white alabastrum(diploid) 3	5.599
	CNS0095597	Whole white alabastrum(diploid) 4	4.989
	CNS0095598	Silvery flower (diploied) 1	8.356
	CNS0095599	Silvery flower (diploied) 2	5.247
	CNS0095600	Silvery flower (diploied) 3	3.179
	CNS0095601	Golden flower (diploid) 1	3.618
	CNS0095602	Golden flower (diploid) 2	2.819
	CNS0095603	Golden flower (diploid) 3	3.260
	CNS0095604	Slightly white alabastrum(tetraploid) 1	8.622
	CNS0095605	Slightly white alabastrum(tetraploid) 2	8.741
	CNS0095606	Slightly white alabastrum(tetraploid) 3	17.379
	CNS0095607	Whole white alabastrum(tetraploid) 1	4.203
	CNS0095608	Whole white alabastrum(tetraploid) 2	2.035
	CNS0095609	Whole white alabastrum(tetraploid) 3	12.488
	CNS0095610	Silvery flower (tetraploid) 1	8.602
	CNS0095611	Silvery flower (tetraploid) 2	7.267
	CNS0095612	Silvery flower (tetraploid) 3	3.838
	CNS0095613	Golden flower (tetraploid) 1	3.404
	CNS0095614	Golden flower (tetraploid) 2	7.335
	CNS0095615	Golden flower (tetraploid) 3	3.990
CRA001975	CRR073297	Stem 1	5.820
	CRR073298	Stem 2	5.034
	CRR073299	Stem 3	2.747
	CRR073300	Leaf 1	4.007
	CRR073301	Leaf 2	4.291
	CRR073302	Leaf 3	3.265
	CRR073303	Juvenile bud 1	4.473
	CRR073304	Juvenile bud 2	2.298
	CRR073305	Juvenile bud 3	4.117
	CRR073306	Third green 1	0.329
	CRR073307	Third green 2	0.044
	CRR073308	Third green 3	0.472
	CRR073309	Second white 1	0.471
	CRR073310	Second white 2	0.962
	CRR073311	Second white 3	0.170
	CRR073312	Silver flowering 1	0.112
	CRR073313	Silver flowering 2	0.624
	CRR073314	Silver flowering 3	0.267
	CRR073315	Gold flowering 1	2.702
	CRR073316	Gold flowering 2	3.818
	CRR073317	Gold flowering 3	1.915
	CRR073318	Tawny withering 1	5.654
	CRR073319	Tawny withering 2	3.884
	CRR073320	Tawny withering 3	5.388