Gene detail

Detail information of GWHGAAZE017483

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	CDO98126.1	0	unnamed protein product [Coffea canephora]
Swissprot	tr\|Q9M310\|FBK77_ARATH	0.000000001	F-box/kelch-repeat protein At3g61590
trEMBL	tr\|A0A068TPF0\|A0A068TPF0_COFCA	0	Coffea canephora DH200=94 genomic scaffold, scaffold_2 {ECO:0000313\|EMBL:CDO98126.1}
TAIR10	AT1G30950.1	2E-14	F-box family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000005	gene	6912103	6913212	+
GWHAAZE00000005	mRNA	6912103	6913212	+
GWHAAZE00000005	exon	6912103	6913212	+
GWHAAZE00000005	CDS	6912103	6913212	+

Transcript Sequence
>GWHTAAZE017503 ATGTGGAACAACCTTCCTTTCGATCTCCTAGCCAACATTTTCTCCTTCCTCTCCCCAGACTCCTTGGCACGTGCCATGTCAGCCTGCCGGCACTGGCACAAGTGTGCCAATTACTTGGCCCCACCGGATACGCGGCGCAACCACCCTGCCTGGTTAATTGCGTTGCCAGCTCGCGGAGGCACCCTCTCTTACTACGCTCACAACCCAATAGACAATAGTTGGCATACCCTCCCGCTCGGGTTAGGACCCAACCCCGCTAGACCCTTGGCTACAATTGGTGGGCTCATACTCTTCAGACCCACCACCACCACAACTGCCCTCCAATTAGCGGTATGCAACCCCTTCACCACCCAATTCAGGCGCCTCCCAATGCTAAACATTGCCCGGACCAACCCAGCCGTGGGTCTTATAGAGCTAGACCCGACCCATCAAGTTGCCTCACCTAATTTTCGGGTGTATGTTGCTGGAGGGATGTCTGAGGCTTCACGTGGAGGTGCCATGTATGAACCCACATTGGAAATGTACGACTCGAAAAGTGACACGTGGACAATCATCGGATCAATGCCAGTGGAGTTCTCAGTGAGGCTAACGGTGTGGACCCCCAATGAGAGTGTGTATTCTAATGGGGTCCTATATTGGATGACCTCGGCCCGGGCCTATAGTGTAATGGGATTTGAGATTGGCACAAACAATTGGAGTGAATTGAATGTGCCAATGGCAGATAGGCTTGAATTTGCGGCAATTGTGCCGCGGAATGGGAAGCTGACACTTGTCGGCGGCACTGTCAACGGGGACGCTTGCATATGGGAATTGGGTGAGGGAGAAAGGTGGGATATAATTGAGAAGGTCCCATTTGAACTAAGAGTGAGATTTTTAAAGGGGAAGGGAAATTGGGGTAGTACTAAATGTGTGGGTATTGATGGCATAATGTGCTTGTATAGGGATATTGGTTCAGGAATGTTGGTTTGGAGGGAGGTTGTGGATAAGGGTAGATGGGAATGGTTTTGGATAGAAGGTTGTTCATCAGTAAAAGGGAAGCAATTGCAAAATTTCCCAATTAAAGGATTGCTTCTTCACCCAAATCTGGGCTCTTCTCTTCAGAATATGTGA

Network for GWHGAAZE017483

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF12937.8	F-box-like	2	37	1.80E-08
PF01344.26	Kelch_1	151	189	5.10E-06

Protein Sequence

Gene family

Gene family	subfamily
Ubiquitin Family	F-box

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0005515	molecular_function	protein binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	1.916
	SRR3591706	second leaf	2.432
	SRR3591707	mature leaf	3.766
	SRR3591708	Shoot apex	2.401
	SRR3591709	Stem	0.730
	SRR3591710	White floral bud	0.662
	SRR3591711	White flower	1.328
	SRR3591712	Green floral bud	1.555
	SRR3591713	Yellow flower	0.567
SRP173429	SRR8316895	Juvenile bud stage	1.026
	SRR8316896	Juvenile bud stage	2.283
	SRR8316897	Juvenile bud stage	0.632
	SRR8316894	Third green stage	1.018
	SRR8316900	Third green stage	2.236
	SRR8316901	Third green stage	1.721
	SRR8316898	Complete white stage	0.682
	SRR8316899	Complete white stage	1.735
	SRR8316903	Complete white stage	1.490
	SRR8316902	Silver flowering stage	1.240
	SRR8316904	Silver flowering stage	1.528
	SRR8316905	Silver flowering stage	0.541
	SRR8316906	Gold flowering stage	2.022
	SRR8316907	Gold flowering stage	2.246
	SRR8316908	Gold flowering stage	1.385
SRP132670	SRR6706286	Control	4.268
	SRR6706287	Light intensity 50%	4.215
	SRR6706288	Light intensity 20%	3.659
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	2.175
	CNS0095593	Slightly white alabastrum(diploid) 2	3.052
	CNS0095594	Slightly white alabastrum(diploid) 3	1.092
	CNS0095595	Whole white alabastrum(diploid) 2	2.858
	CNS0095596	Whole white alabastrum(diploid) 3	1.928
	CNS0095597	Whole white alabastrum(diploid) 4	2.588
	CNS0095598	Silvery flower (diploied) 1	0.658
	CNS0095599	Silvery flower (diploied) 2	2.720
	CNS0095600	Silvery flower (diploied) 3	1.787
	CNS0095601	Golden flower (diploid) 1	1.575
	CNS0095602	Golden flower (diploid) 2	1.734
	CNS0095603	Golden flower (diploid) 3	1.612
	CNS0095604	Slightly white alabastrum(tetraploid) 1	2.260
	CNS0095605	Slightly white alabastrum(tetraploid) 2	2.877
	CNS0095606	Slightly white alabastrum(tetraploid) 3	4.497
	CNS0095607	Whole white alabastrum(tetraploid) 1	1.367
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.952
	CNS0095609	Whole white alabastrum(tetraploid) 3	1.493
	CNS0095610	Silvery flower (tetraploid) 1	1.793
	CNS0095611	Silvery flower (tetraploid) 2	1.550
	CNS0095612	Silvery flower (tetraploid) 3	1.908
	CNS0095613	Golden flower (tetraploid) 1	1.242
	CNS0095614	Golden flower (tetraploid) 2	0.933
	CNS0095615	Golden flower (tetraploid) 3	0.955
CRA001975	CRR073297	Stem 1	3.597
	CRR073298	Stem 2	3.923
	CRR073299	Stem 3	3.653
	CRR073300	Leaf 1	2.323
	CRR073301	Leaf 2	3.080
	CRR073302	Leaf 3	1.509
	CRR073303	Juvenile bud 1	2.191
	CRR073304	Juvenile bud 2	1.126
	CRR073305	Juvenile bud 3	2.591
	CRR073306	Third green 1	2.332
	CRR073307	Third green 2	1.752
	CRR073308	Third green 3	2.031
	CRR073309	Second white 1	0.960
	CRR073310	Second white 2	1.870
	CRR073311	Second white 3	0.666
	CRR073312	Silver flowering 1	1.341
	CRR073313	Silver flowering 2	0.188
	CRR073314	Silver flowering 3	0.781
	CRR073315	Gold flowering 1	0.516
	CRR073316	Gold flowering 2	0.133
	CRR073317	Gold flowering 3	0.252
	CRR073318	Tawny withering 1	0.492
	CRR073319	Tawny withering 2	0.334
	CRR073320	Tawny withering 3	0.292