Gene detail

Detail information of GWHGAAZE017491

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_010061924.1	5.1162E-78	PREDICTED: signal peptidase complex catalytic subunit SEC11A [Eucalyptus grandis]
trEMBL	tr\|I1KFJ3\|I1KFJ3_SOYBN	2E-78	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA06G46690.2}
TAIR10	AT1G52600.1	3E-61	Peptidase S24/S26A/S26B/S26C family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000005	gene	6983735	6988140	-
GWHAAZE00000005	mRNA	6983735	6988140	-
GWHAAZE00000005	exon	6983735	6983792	-
GWHAAZE00000005	exon	6984278	6984365	-
GWHAAZE00000005	exon	6984505	6984546	-
GWHAAZE00000005	exon	6984656	6984701	-
GWHAAZE00000005	exon	6985111	6985146	-
GWHAAZE00000005	exon	6986095	6986166	-
GWHAAZE00000005	exon	6988006	6988140	-
GWHAAZE00000005	CDS	6988006	6988140	-
GWHAAZE00000005	CDS	6986095	6986166	-
GWHAAZE00000005	CDS	6985111	6985146	-
GWHAAZE00000005	CDS	6984656	6984701	-
GWHAAZE00000005	CDS	6984505	6984546	-
GWHAAZE00000005	CDS	6984278	6984365	-
GWHAAZE00000005	CDS	6983735	6983792	-

Transcript Sequence
>GWHTAAZE017511 ATGTATTTTCTCTTGGTTTTAGGTGTTATAATTACGTCTGCACTGATAATATGGAAGGCATTGATATGCATTACTGGGAGTCAATCTCCAATTGTTGTTGTTCTTTCTGGAAGCATGGAACCTGGTTTCAAGAAAGGGGACATCTTATTCTTGCATATGAACAAAAACCCAATCCGCGCTGGTGAAATTGTTGTATATAATGTTGAGGGTCGCCCTATTCCAATTGTTCATCGTGTAATTAAGATTCATGAACGGCAGGATAATAGAGAAGTTGATGTCCTTACAAAAGGGAAGTGGGAGCTAAACTTGAATAAATGGCCTGGTCATCACTGGGATAATAATCCTGATGATGACATAATGTTATATGCTCATGGTCAGCTCTGGCTTCAGCAGCACCATATAATGGGCAGAGCTATGGGGTTCTTACCTTACTTAGGCTGGGTAACAATTATAATGACCGAGAAGCCTATTGTAAAG

Network for GWHGAAZE017491

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00717.24	Peptidase_S24	18	84	6.50E-10

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K13280	SEC11, sipW	Protein export	map03060

Gene Ontology

GO term	Ontology	Name
GO:0006465	biological_process	signal peptide processing
GO:0016020	cellular_component	membrane
GO:0008233	molecular_function	peptidase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	0.000
	SRR3591706	second leaf	0.000
	SRR3591707	mature leaf	0.000
	SRR3591708	Shoot apex	0.000
	SRR3591709	Stem	0.000
	SRR3591710	White floral bud	0.000
	SRR3591711	White flower	0.000
	SRR3591712	Green floral bud	0.000
	SRR3591713	Yellow flower	0.000
SRP173429	SRR8316895	Juvenile bud stage	8.429
	SRR8316896	Juvenile bud stage	12.108
	SRR8316897	Juvenile bud stage	7.233
	SRR8316894	Third green stage	3.443
	SRR8316900	Third green stage	16.758
	SRR8316901	Third green stage	18.545
	SRR8316898	Complete white stage	10.585
	SRR8316899	Complete white stage	22.893
	SRR8316903	Complete white stage	16.827
	SRR8316902	Silver flowering stage	10.357
	SRR8316904	Silver flowering stage	13.131
	SRR8316905	Silver flowering stage	7.149
	SRR8316906	Gold flowering stage	27.176
	SRR8316907	Gold flowering stage	24.267
	SRR8316908	Gold flowering stage	33.690
SRP132670	SRR6706286	Control	6.427
	SRR6706287	Light intensity 50%	6.483
	SRR6706288	Light intensity 20%	6.511
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	15.575
	CNS0095593	Slightly white alabastrum(diploid) 2	16.778
	CNS0095594	Slightly white alabastrum(diploid) 3	14.835
	CNS0095595	Whole white alabastrum(diploid) 2	15.824
	CNS0095596	Whole white alabastrum(diploid) 3	14.194
	CNS0095597	Whole white alabastrum(diploid) 4	11.253
	CNS0095598	Silvery flower (diploied) 1	26.826
	CNS0095599	Silvery flower (diploied) 2	24.474
	CNS0095600	Silvery flower (diploied) 3	32.201
	CNS0095601	Golden flower (diploid) 1	19.905
	CNS0095602	Golden flower (diploid) 2	41.435
	CNS0095603	Golden flower (diploid) 3	37.325
	CNS0095604	Slightly white alabastrum(tetraploid) 1	5.257
	CNS0095605	Slightly white alabastrum(tetraploid) 2	6.095
	CNS0095606	Slightly white alabastrum(tetraploid) 3	8.564
	CNS0095607	Whole white alabastrum(tetraploid) 1	5.599
	CNS0095608	Whole white alabastrum(tetraploid) 2	6.005
	CNS0095609	Whole white alabastrum(tetraploid) 3	6.749
	CNS0095610	Silvery flower (tetraploid) 1	17.230
	CNS0095611	Silvery flower (tetraploid) 2	13.716
	CNS0095612	Silvery flower (tetraploid) 3	12.167
	CNS0095613	Golden flower (tetraploid) 1	21.794
	CNS0095614	Golden flower (tetraploid) 2	26.999
	CNS0095615	Golden flower (tetraploid) 3	11.736
CRA001975	CRR073297	Stem 1	2.315
	CRR073298	Stem 2	2.690
	CRR073299	Stem 3	0.524
	CRR073300	Leaf 1	1.882
	CRR073301	Leaf 2	2.414
	CRR073302	Leaf 3	1.741
	CRR073303	Juvenile bud 1	2.835
	CRR073304	Juvenile bud 2	1.622
	CRR073305	Juvenile bud 3	2.968
	CRR073306	Third green 1	0.283
	CRR073307	Third green 2	1.041
	CRR073308	Third green 3	0.719
	CRR073309	Second white 1	2.047
	CRR073310	Second white 2	2.838
	CRR073311	Second white 3	1.192
	CRR073312	Silver flowering 1	1.832
	CRR073313	Silver flowering 2	2.447
	CRR073314	Silver flowering 3	1.280
	CRR073315	Gold flowering 1	1.535
	CRR073316	Gold flowering 2	2.202
	CRR073317	Gold flowering 3	0.975
	CRR073318	Tawny withering 1	6.665
	CRR073319	Tawny withering 2	10.953
	CRR073320	Tawny withering 3	5.734