Gene detail

Detail information of GWHGAAZE017496

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	CDP13502.1	0	unnamed protein product [Coffea canephora]
Swissprot	tr\|Q9LFN6\|RH56_ARATH	0	DEAD-box ATP-dependent RNA helicase 56
trEMBL	tr\|A0A068UYW5\|A0A068UYW5_COFCA	0	Coffea canephora DH200=94 genomic scaffold, scaffold_75 {ECO:0000313\|EMBL:CDP13502.1}
TAIR10	AT5G11170.2	4E-177	DEAD/DEAH box RNA helicase family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000005	gene	7045624	7048428	-
GWHAAZE00000005	mRNA	7045624	7048428	-
GWHAAZE00000005	exon	7045624	7045731	-
GWHAAZE00000005	exon	7045829	7045973	-
GWHAAZE00000005	exon	7046230	7046267	-
GWHAAZE00000005	exon	7046605	7046793	-
GWHAAZE00000005	exon	7046887	7046943	-
GWHAAZE00000005	exon	7047683	7047801	-
GWHAAZE00000005	exon	7047918	7048149	-
GWHAAZE00000005	exon	7048255	7048428	-
GWHAAZE00000005	CDS	7048255	7048428	-
GWHAAZE00000005	CDS	7047918	7048149	-
GWHAAZE00000005	CDS	7047683	7047801	-
GWHAAZE00000005	CDS	7046887	7046943	-
GWHAAZE00000005	CDS	7046605	7046793	-
GWHAAZE00000005	CDS	7046230	7046267	-
GWHAAZE00000005	CDS	7045829	7045973	-
GWHAAZE00000005	CDS	7045624	7045731	-

Transcript Sequence
>GWHTAAZE017516 ATGGACGTCATTTGTCAAGCTAAATCTGGGATGGGGAAAACTGCTGTGTTTGTTCTGTCTACTCTGCAGCAAATTGAACCTGTAGCTGGGCAAGTTGCTGCCCTTGTCCTTTGCCATACAAGAGAATTGGCATACCAGGCATGTCTGGTCTTTTGGGACAAGAAACAAGTTTATATCTGTCATGAATTTGAGAGATTTAGTACTTACCTTCCTGAAATTAAGGTTGCTGTGTTCTATGGTGGTGTCAACATAAAAATTCACAAGGACTTACTGAAAAATGAATGCCCTCATGTTGTGGTTGGAACACCGGGAAGGATATTGGCTCTTGCTAGAGAGAAGGAACTCGGGCTAAAAAACGTGAGACATTTTATCCTTGACGAATGTGACAAGATGCTTGAGTCACTTGACATGAGGAAAGATGTGCAGGAAATTTTTAAGATGACCCCTCATGATAAGCAAGTTATGATGTTCTCTGCCACACTCAGCAAAGAGATTCGCCCTGTTTGCAAGAAGTTTATGCAAGATCCAATGGAAATTTATGTTGATGACGAGGCCAAGTTGACTCTTCACGGACTTGTACAGCATTATATCAAATTGAGTGAACTGGAGAAGAACAGGAAGCTAAATGATCTCCTCGATGCCTTGGATTTCAATCAAGTTGTCATTTTTGTTAAAAGCGTGAGTAGAGCGGCTGAGCTGAACAAGCTGCTTATCGAGTGCAACTTTCCATCTATCTGCATCCATTCCGGCATGTCTCAGGAGGAAAGGCATTGCTTGTCCCGACCCTCTGGTGGAAGATTGGATAATTGGTTGACACGCTACAAGGGTTTCAAGGAGGGGCATAAAAGAATCCTTGTTGCTACCGATTTAGTTGGAAGAGGAATAGACATAGAGCGTGTCAATATTGTTATCAACTATGACATGCCAGATTCTGCTGATACTTACCTTCACAGGGTGGGCAGGGCTGGTAGGTTTGGCACCAAAGGGCTTGCCATTACTTTTGTTTCATCTGCTTCCGACTCTGATGTTCTTAATCAGGTACTCTATTCGTGTTTAACATAG

Network for GWHGAAZE017496

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00270.30	DEAD	2	165	1.10E-28
PF00271.32	Helicase_C	205	326	2.20E-24

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K12812	DDX39B, UAP56, SUB2	Spliceosome	map03040
		RNA transport	map03013
		mRNA surveillance pathway	map03015

Gene Ontology

GO term	Ontology	Name
GO:0003676	molecular_function	nucleic acid binding
GO:0005524	molecular_function	ATP binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	69.744
	SRR3591706	second leaf	57.618
	SRR3591707	mature leaf	52.104
	SRR3591708	Shoot apex	97.090
	SRR3591709	Stem	62.477
	SRR3591710	White floral bud	95.208
	SRR3591711	White flower	128.349
	SRR3591712	Green floral bud	88.222
	SRR3591713	Yellow flower	90.529
SRP173429	SRR8316895	Juvenile bud stage	42.418
	SRR8316896	Juvenile bud stage	61.256
	SRR8316897	Juvenile bud stage	29.033
	SRR8316894	Third green stage	26.917
	SRR8316900	Third green stage	73.630
	SRR8316901	Third green stage	70.030
	SRR8316898	Complete white stage	43.777
	SRR8316899	Complete white stage	96.678
	SRR8316903	Complete white stage	59.278
	SRR8316902	Silver flowering stage	51.338
	SRR8316904	Silver flowering stage	60.239
	SRR8316905	Silver flowering stage	24.043
	SRR8316906	Gold flowering stage	87.500
	SRR8316907	Gold flowering stage	87.382
	SRR8316908	Gold flowering stage	104.711
SRP132670	SRR6706286	Control	73.939
	SRR6706287	Light intensity 50%	74.051
	SRR6706288	Light intensity 20%	75.392
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	46.199
	CNS0095593	Slightly white alabastrum(diploid) 2	48.900
	CNS0095594	Slightly white alabastrum(diploid) 3	39.881
	CNS0095595	Whole white alabastrum(diploid) 2	40.242
	CNS0095596	Whole white alabastrum(diploid) 3	40.003
	CNS0095597	Whole white alabastrum(diploid) 4	36.889
	CNS0095598	Silvery flower (diploied) 1	59.398
	CNS0095599	Silvery flower (diploied) 2	65.708
	CNS0095600	Silvery flower (diploied) 3	70.323
	CNS0095601	Golden flower (diploid) 1	53.364
	CNS0095602	Golden flower (diploid) 2	59.346
	CNS0095603	Golden flower (diploid) 3	58.569
	CNS0095604	Slightly white alabastrum(tetraploid) 1	52.645
	CNS0095605	Slightly white alabastrum(tetraploid) 2	40.941
	CNS0095606	Slightly white alabastrum(tetraploid) 3	74.536
	CNS0095607	Whole white alabastrum(tetraploid) 1	27.689
	CNS0095608	Whole white alabastrum(tetraploid) 2	21.051
	CNS0095609	Whole white alabastrum(tetraploid) 3	57.160
	CNS0095610	Silvery flower (tetraploid) 1	66.170
	CNS0095611	Silvery flower (tetraploid) 2	54.937
	CNS0095612	Silvery flower (tetraploid) 3	56.717
	CNS0095613	Golden flower (tetraploid) 1	32.472
	CNS0095614	Golden flower (tetraploid) 2	46.174
	CNS0095615	Golden flower (tetraploid) 3	49.071
CRA001975	CRR073297	Stem 1	83.350
	CRR073298	Stem 2	75.117
	CRR073299	Stem 3	65.709
	CRR073300	Leaf 1	80.754
	CRR073301	Leaf 2	80.169
	CRR073302	Leaf 3	90.466
	CRR073303	Juvenile bud 1	70.970
	CRR073304	Juvenile bud 2	68.509
	CRR073305	Juvenile bud 3	66.876
	CRR073306	Third green 1	61.786
	CRR073307	Third green 2	45.230
	CRR073308	Third green 3	55.800
	CRR073309	Second white 1	57.235
	CRR073310	Second white 2	52.281
	CRR073311	Second white 3	47.256
	CRR073312	Silver flowering 1	55.057
	CRR073313	Silver flowering 2	57.165
	CRR073314	Silver flowering 3	54.432
	CRR073315	Gold flowering 1	67.077
	CRR073316	Gold flowering 2	77.765
	CRR073317	Gold flowering 3	68.040
	CRR073318	Tawny withering 1	74.399
	CRR073319	Tawny withering 2	67.547
	CRR073320	Tawny withering 3	74.280