Gene detail

Detail information of GWHGAAZE017502

Functional Annotation

Database	Orthologs	Annotation
Nr	XP_011073436.1	PREDICTED: phospholipase D alpha 1 [Sesamum indicum]
Swissprot	tr\|O04865\|PLDA1_VIGUN	Phospholipase D alpha 1
trEMBL	tr\|A0A068TPA0\|A0A068TPA0_COFCA	Phospholipase D {ECO:0000256\|PIRNR:PIRNR036470}
TAIR10	AT3G15730.1	phospholipase D alpha 1

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000005	gene	7103275	7104885	+
GWHAAZE00000005	mRNA	7103275	7104885	+
GWHAAZE00000005	exon	7103275	7103914	+
GWHAAZE00000005	exon	7104452	7104885	+
GWHAAZE00000005	CDS	7103275	7103914	+
GWHAAZE00000005	CDS	7104452	7104885	+

Transcript Sequence
>GWHTAAZE017522 ATGTTCCCAGATGACCAGGAGACTTGGAATGTTCAGCTTTTCAGATCCATTGATGGTGGGGCCGCTTTTGGCTTCCCTGAAACTCCAGAAGAGGCTGCCCAAGCAGGTCTTGTGAGTGGTAAAGATAATATAATTGATCGAAGCATTCAAGATGCTTATATTCATGCTATTAGACGGGCTAGGCATTTCATTTATATTGAGAACCAGTATTTTCTTGGAAGCTCATTCGGGTGGAATTCGGACGATATAAAGGTTGAGAGTATTGGTGCTTTGCATCTAATCCCGAAGGAACTTTCTTTGAAGATTGTTAGCAAGATTGAAGCTGGTGAGAGGTTCACTGTGTATGTTGTGGTCCCAATGTGGCCGGAAGGGATCCCAGAGAGTGCTTCTGTTCAGGCTATACTGGACTGGCAAAGGAGAACCATAGAGATGATGTATAAAGATATCGTTCAGGTTCTCCAATCCAAGGGGATTGAGGAGGACCCTAGAAATTATTTGACCTTTTTCTGCCTTGGCAATCGTGAGGTGAAGAGGAGTGGCGAATATGAACCATCCGAGCAGCCAGAACCAGATAGCGATTATCTTAAAGCCCAAGAGTCCCGACGCTTCATGATCTATGTGCATACAAAGATGATGATTGTTGATGACGAATACATAATAATTGGATCAGCCAACATCAACCAGAGATCAATGGACGGAGCCAGGGACTCAGAGATAGCAATGGGAGCGTACCAACCCCATCACCTAGCAGCCAGGCATTCAGCAAGGGGCCAAATTCATGGTTTCCGAATGGCATTATGGTATGAACACCTAGGCATGCTAGACGACGCGTTCCTTCGGCCAGAGGGCATAGAGTGCGTCGAAAAGGTTAATAACATTGCTGATAAGTATTGGGACATGTATTCGAGTGATAGCCTTGAACGTGATCTGCCAGGTCACCTGCTCCGTTACCCCATCGGTATAGCCAGTGATGGGGATGTTACAGAGTTGCCTGGGTTCGAGTTTTTCCCTGATACGCAGGCACGCATTCTTGGTGCCAAGTCTGATTACCTTCCTCCCATTCTTACCACTTAA

Network for GWHGAAZE017502

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00614.23	PLDc	204	230	5.80E-08
PF12357.9	PLD_C	275	347	7.80E-29

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K01115	PLD1_2	Metabolic pathways	map01100
		Biosynthesis of secondary metabolites	map01110
		Glycerophospholipid metabolism	map00564
		Ether lipid metabolism	map00565
		Ras signaling pathway	map04014
		Phospholipase D signaling pathway	map04072
		Sphingolipid signaling pathway	map04071
		cAMP signaling pathway	map04024
		Endocytosis	map04144
		Fc gamma R-mediated phagocytosis	map04666
		GnRH signaling pathway	map04912
		Parathyroid hormone synthesis, secretion and action	map04928
		Glutamatergic synapse	map04724

Gene Ontology

GO term	Ontology	Name
GO:0003824	molecular_function	catalytic activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	1.586
	SRR3591706	second leaf	0.175
	SRR3591707	mature leaf	0.096
	SRR3591708	Shoot apex	2.829
	SRR3591709	Stem	0.946
	SRR3591710	White floral bud	3.385
	SRR3591711	White flower	0.308
	SRR3591712	Green floral bud	143.154
	SRR3591713	Yellow flower	0.112
SRP173429	SRR8316895	Juvenile bud stage	20.395
	SRR8316896	Juvenile bud stage	154.756
	SRR8316897	Juvenile bud stage	86.921
	SRR8316894	Third green stage	58.076
	SRR8316900	Third green stage	197.746
	SRR8316901	Third green stage	239.435
	SRR8316898	Complete white stage	0.842
	SRR8316899	Complete white stage	2.096
	SRR8316903	Complete white stage	0.738
	SRR8316902	Silver flowering stage	0.163
	SRR8316904	Silver flowering stage	0.458
	SRR8316905	Silver flowering stage	0.428
	SRR8316906	Gold flowering stage	0.023
	SRR8316907	Gold flowering stage	0.065
	SRR8316908	Gold flowering stage	0.281
SRP132670	SRR6706286	Control	65.823
	SRR6706287	Light intensity 50%	59.176
	SRR6706288	Light intensity 20%	50.851
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	153.001
	CNS0095593	Slightly white alabastrum(diploid) 2	109.293
	CNS0095594	Slightly white alabastrum(diploid) 3	184.938
	CNS0095595	Whole white alabastrum(diploid) 2	165.402
	CNS0095596	Whole white alabastrum(diploid) 3	219.073
	CNS0095597	Whole white alabastrum(diploid) 4	140.517
	CNS0095598	Silvery flower (diploied) 1	2.253
	CNS0095599	Silvery flower (diploied) 2	1.216
	CNS0095600	Silvery flower (diploied) 3	0.215
	CNS0095601	Golden flower (diploid) 1	1.939
	CNS0095602	Golden flower (diploid) 2	0.517
	CNS0095603	Golden flower (diploid) 3	0.735
	CNS0095604	Slightly white alabastrum(tetraploid) 1	288.089
	CNS0095605	Slightly white alabastrum(tetraploid) 2	261.837
	CNS0095606	Slightly white alabastrum(tetraploid) 3	5.036
	CNS0095607	Whole white alabastrum(tetraploid) 1	316.422
	CNS0095608	Whole white alabastrum(tetraploid) 2	304.786
	CNS0095609	Whole white alabastrum(tetraploid) 3	237.395
	CNS0095610	Silvery flower (tetraploid) 1	0.421
	CNS0095611	Silvery flower (tetraploid) 2	0.907
	CNS0095612	Silvery flower (tetraploid) 3	1.258
	CNS0095613	Golden flower (tetraploid) 1	0.339
	CNS0095614	Golden flower (tetraploid) 2	0.460
	CNS0095615	Golden flower (tetraploid) 3	0.835
CRA001975	CRR073297	Stem 1	42.229
	CRR073298	Stem 2	74.356
	CRR073299	Stem 3	42.940
	CRR073300	Leaf 1	101.946
	CRR073301	Leaf 2	113.896
	CRR073302	Leaf 3	93.680
	CRR073303	Juvenile bud 1	54.046
	CRR073304	Juvenile bud 2	46.516
	CRR073305	Juvenile bud 3	5.110
	CRR073306	Third green 1	0.756
	CRR073307	Third green 2	1.017
	CRR073308	Third green 3	0.639
	CRR073309	Second white 1	0.044
	CRR073310	Second white 2	0.349
	CRR073311	Second white 3	0.587
	CRR073312	Silver flowering 1	1.370
	CRR073313	Silver flowering 2	1.596
	CRR073314	Silver flowering 3	0.302
	CRR073315	Gold flowering 1	1.549
	CRR073316	Gold flowering 2	0.049
	CRR073317	Gold flowering 3	0.686
	CRR073318	Tawny withering 1	0.846
	CRR073319	Tawny withering 2	1.267
	CRR073320	Tawny withering 3	0.966