Gene detail

Detail information of GWHGAAZE017532

Functional Annotation

Database	Orthologs	Annotation
Nr	XP_011073388.1	PREDICTED: glycerol kinase-like [Sesamum indicum]
Swissprot	tr\|Q9M8L4\|GLPK_ARATH	Glycerol kinase
trEMBL	tr\|A0A061G8K8\|A0A061G8K8_THECC	Actin-like ATPase superfamily protein isoform 1 {ECO:0000313\|EMBL:EOY25916.1}
TAIR10	AT1G80460.1	Actin-like ATPase superfamily protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000005	gene	7567995	7572820	-
GWHAAZE00000005	mRNA	7567995	7572820	-
GWHAAZE00000005	exon	7567995	7568240	-
GWHAAZE00000005	exon	7568820	7569786	-
GWHAAZE00000005	exon	7572325	7572591	-
GWHAAZE00000005	exon	7572681	7572820	-
GWHAAZE00000005	CDS	7572681	7572820	-
GWHAAZE00000005	CDS	7572325	7572591	-
GWHAAZE00000005	CDS	7568820	7569786	-
GWHAAZE00000005	CDS	7567995	7568240	-

Transcript Sequence
>GWHTAAZE017552 ATGTCGAAAGGGGAAGAAGAGGTGTTCATAGGATCAATCGATCAAGGAACCACCAGCACCAGATTCATAATCTACGATCGATTCGCTCGGCCCATTGGATCTCACCAGGTCGAGTTCACTCAGTTCTATCCAGAAGCAGGATGGGTGGAGCACAATCCAATGGAAATATTGGAGAGCGTGAGGATATGTATTGCAAAGGCTCTTGACAAGGCGACAGCGAATGGTCACAACGTAGACAGTGGGCTGAAGGCGATTGGCCTGACGAATCAGAGAGAGACGACGCTCGTATGGAGCAAATCAAGTGGCTGCCCTCTGTATAACGCCATTGTTTGGATGGATGTTCGTACCAGTGCTGTTTGCAGGTTCGTATATTCATATTCATATTTATGTTTATTTTTATATATTTGGAAACTGGAGAAAGAATTACCTGGGGGCAGAACCCACTTTGTCGAGTCGTGTGGATTGCCCATAAGCACTTACTTCAGTGCATTGAAGCTGCTATGGTTGATAGACAATGTGGACGCCGTTAAAAAGGCTGTGGATTCAGGGGACGCTTTATTTGGTACTATAGACTCGTGGTTGGTCTGGAACTTAACTGGAGGAATCCATAACGGTTTACATATAACTGATGTCTCAAATGCGTCAAGAACTATGCTGATGAATCTCAAAACCCTTGATTGGGACAAAAAAACATTGGATATACTAGGAATCCCAGCCGAAATTCTCCCCAAAATAGTAAGCAACTCCGAGATTATTGGAAACATAGCAAAGGGCTGGCCGATTCCTGGAATCCCAATTGCCGGTTGTTTAGGTGATCAACATGCAGCAATGCTTGGGCAAGTGTGCAAAAAAGGCGAGGCCAAAAGCACTTATGGAACCGGGGCTTTCATTCTTCTTAACACTGGCGAAGAGATAATTAAGTCAAATCATGGTCTGTTAAGTACTATTGCATTTAAGCTAGGTTCTAATGCACCGGCAAACTACGCTTTAGAGGGCTCGATTGCCATTGCCGGGGCCGCGGTTCAGTGGCTTAGAGACAGTCTTGGGATAATTAGTAGTGCTAGTGAAATAGAGGAGTTGGCCTTGCAAGTTGATAACACCGGTGGGGTTTACTTTGTGCCAGCGTTTAATGGGCTTTTTGCTCCGTGGTGGAGGGATGATGCTCGTGGAGTTTGTATTGGCATTACGAGGTTCACTAATAAGTCTCATATTGCTCGGGCTGTTCTTGAGAGTATGTGTTTTCAGGTGAAAGATGTGTTGGATTCGATGCATAAGGATGCTGGGGAGAAAGGGGAAGCTAAAAATGAGAAGGGGGAGTTCTTGCTTAGGGTGGATGGTGGTGCTACTGTTAATAATCTTCTGATGCAAATTCAGGCGGACTTGTTAGGTACCCCGGTGGTAAGACCAGCGGACATAGAAACGACAGCTCTAGGAGCGGCCTATGCAGCTGGGTTAGCCATTGGGATGTGGACAGAAGCAGATCTTTTCAATTCAGGTGAGAAGATGAAGAAAGCTACCACTTTTAATCCTGTTTTACGCGAGGAACTCAGGAAGAAGAAGGTCGAGTCCTGGTGCAAAGCTGTTTCCAGAACTTTCGACTTGGCTGATTTGTCCCTGTGA

Network for GWHGAAZE017532

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00370.22	FGGY_N	10	279	5.80E-63
PF02782.17	FGGY_C	287	486	4.60E-58

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K00864	glpK, GK	Metabolic pathways	map01100
		Glycerolipid metabolism	map00561
		PPAR signaling pathway	map03320
		Plant-pathogen interaction	map04626

Gene Ontology

GO term	Ontology	Name
GO:0005975	biological_process	carbohydrate metabolic process
GO:0006072	biological_process	glycerol-3-phosphate metabolic process
GO:0016773	molecular_function	phosphotransferase activity, alcohol group as acceptor
GO:0004370	molecular_function	glycerol kinase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	41.542
	SRR3591706	second leaf	26.423
	SRR3591707	mature leaf	11.011
	SRR3591708	Shoot apex	42.886
	SRR3591709	Stem	19.830
	SRR3591710	White floral bud	31.546
	SRR3591711	White flower	22.435
	SRR3591712	Green floral bud	48.774
	SRR3591713	Yellow flower	15.224
SRP173429	SRR8316895	Juvenile bud stage	32.373
	SRR8316896	Juvenile bud stage	56.019
	SRR8316897	Juvenile bud stage	20.572
	SRR8316894	Third green stage	18.211
	SRR8316900	Third green stage	64.521
	SRR8316901	Third green stage	70.002
	SRR8316898	Complete white stage	23.733
	SRR8316899	Complete white stage	46.177
	SRR8316903	Complete white stage	33.414
	SRR8316902	Silver flowering stage	15.098
	SRR8316904	Silver flowering stage	17.663
	SRR8316905	Silver flowering stage	10.266
	SRR8316906	Gold flowering stage	30.394
	SRR8316907	Gold flowering stage	31.985
	SRR8316908	Gold flowering stage	23.072
SRP132670	SRR6706286	Control	82.817
	SRR6706287	Light intensity 50%	73.844
	SRR6706288	Light intensity 20%	71.017
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	47.296
	CNS0095593	Slightly white alabastrum(diploid) 2	43.319
	CNS0095594	Slightly white alabastrum(diploid) 3	48.697
	CNS0095595	Whole white alabastrum(diploid) 2	40.487
	CNS0095596	Whole white alabastrum(diploid) 3	55.158
	CNS0095597	Whole white alabastrum(diploid) 4	41.584
	CNS0095598	Silvery flower (diploied) 1	30.256
	CNS0095599	Silvery flower (diploied) 2	34.438
	CNS0095600	Silvery flower (diploied) 3	52.758
	CNS0095601	Golden flower (diploid) 1	33.864
	CNS0095602	Golden flower (diploid) 2	47.659
	CNS0095603	Golden flower (diploid) 3	45.574
	CNS0095604	Slightly white alabastrum(tetraploid) 1	55.519
	CNS0095605	Slightly white alabastrum(tetraploid) 2	50.310
	CNS0095606	Slightly white alabastrum(tetraploid) 3	43.873
	CNS0095607	Whole white alabastrum(tetraploid) 1	55.407
	CNS0095608	Whole white alabastrum(tetraploid) 2	61.403
	CNS0095609	Whole white alabastrum(tetraploid) 3	80.347
	CNS0095610	Silvery flower (tetraploid) 1	42.381
	CNS0095611	Silvery flower (tetraploid) 2	41.469
	CNS0095612	Silvery flower (tetraploid) 3	26.629
	CNS0095613	Golden flower (tetraploid) 1	15.234
	CNS0095614	Golden flower (tetraploid) 2	24.667
	CNS0095615	Golden flower (tetraploid) 3	22.381
CRA001975	CRR073297	Stem 1	51.056
	CRR073298	Stem 2	46.057
	CRR073299	Stem 3	55.915
	CRR073300	Leaf 1	50.185
	CRR073301	Leaf 2	53.132
	CRR073302	Leaf 3	55.832
	CRR073303	Juvenile bud 1	52.419
	CRR073304	Juvenile bud 2	45.923
	CRR073305	Juvenile bud 3	55.241
	CRR073306	Third green 1	35.944
	CRR073307	Third green 2	27.456
	CRR073308	Third green 3	30.927
	CRR073309	Second white 1	20.054
	CRR073310	Second white 2	13.284
	CRR073311	Second white 3	14.526
	CRR073312	Silver flowering 1	14.281
	CRR073313	Silver flowering 2	12.005
	CRR073314	Silver flowering 3	12.939
	CRR073315	Gold flowering 1	53.613
	CRR073316	Gold flowering 2	64.650
	CRR073317	Gold flowering 3	59.208
	CRR073318	Tawny withering 1	75.796
	CRR073319	Tawny withering 2	55.440
	CRR073320	Tawny withering 3	68.206