Gene detail

Detail information of GWHGAAZE017534

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_002271635.1	0	PREDICTED: protein SRG1 isoform X1 [Vitis vinifera]
Swissprot	tr\|Q39224\|SRG1_ARATH	1E-63	Protein SRG1
trEMBL	tr\|D7TZ94\|D7TZ94_VITVI	0	Putative uncharacterized protein {ECO:0000313\|EMBL:CBI36408.3}
TAIR10	AT1G49390.1	2E-82	2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000005	gene	7612206	7613933	-
GWHAAZE00000005	mRNA	7612206	7613933	-
GWHAAZE00000005	exon	7613653	7613933	-
GWHAAZE00000005	exon	7613011	7613258	-
GWHAAZE00000005	exon	7612594	7612915	-
GWHAAZE00000005	exon	7612206	7612489	-
GWHAAZE00000005	five_prime_UTR	7613911	7613933	-
GWHAAZE00000005	CDS	7613653	7613910	-
GWHAAZE00000005	CDS	7613011	7613258	-
GWHAAZE00000005	CDS	7612594	7612915	-
GWHAAZE00000005	CDS	7612253	7612489	-
GWHAAZE00000005	three_prime_UTR	7612206	7612252	-

Transcript Sequence
>GWHTAAZE017554 TCCTACTAGATACCTGAAGATATATGGCCGAGGTTTCAGTCCCCTCTGCAGAGGTATTGCTATCAAAGCGCGTCCAAGAAATGGTACTCCATGGCGAGGAGCCACCAGCACCATATATTTGTAGAGACGGTGATGATACTACCGAAGATGATTCTTCTACTACATCTCCAATACCCATCATTGATCTAAGCCTTCTCTCTTCTTCAGCACCATGTACTAAACAGAAGGAAGAAGAATTACAAAAGCTTAAGTCAGCTCTATCCTCGTGGGGTTGCTTTCAGGCAATAGGTCACGGGATTTCAAGTTCTTTGCTAGATAAAATACGCAAGGTCACAAAAGAATTCTTTGAACAGCCAATGGACGAGAAGAAAAAGTGCGCTAAAACAGTGTTAGAGTTTGAGGGTTATGGGGCCGACCCTGTTCCTGAAGAAGGCCAACCACTTGATTGGTCTGATCGCCTCATGCTTGAAGTATACCCTAAAGATAAAAGGAACCTCAAATTCTGGCCCGAAAATCCATCTTCTTTCAGAGAAACTTTAGAAGAGTACACGGATGGTATTAATATGGTGATTGAGGTCACCTCCAAAGGCATGGCAATGTCACTGAATCTAGAAGAGAACTGCTTTTTGAATCAATTCGGTGAAAGACCAATGCTGCAAACACGGTTCAACTACTACTCACGCTGCTCGATGCCTGATCTTGTGCTTGGCTTGAAACCTCACTCAGATGGATCGGGATATACCATTATATTACAAGATGAAGTAGGCCTTCAAATCCTCAAAGATGATAAATGGTTTACAGTTCCCAAAAACTCTGATGCTCTTCTAATACTCATGGCTGATCAAATGGAGATAATGAGCAATGGGATATTTAAAAGCCCAGTGCACAGGGTATTAACCAACTCTCAGAGAGAGAGGATATCGGTGGCGGTGTTCTACACCCCGGAGCAAGGGAAAGATATCGGACCGCAAGAAGGATTGGTTAACGAAGAAAGAGAGAGGGTATTCCAGAATGTGAAAGATTACGCAGATACACACTGGGGATATTACCAAAAAGGGATGAGAGCACTTCATACAGCACGAGTCTAACTTCCTGATTAGCCCCTTTCTCTTGTGGTTTTTTAATATGGCCTAGA

Network for GWHGAAZE017534

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation
CFinderModule0233

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF14226.7	DIOX_N	50	163	2.40E-25
PF03171.21	2OG-FeII_Oxy	212	307	3.70E-21

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0055114	biological_process	oxidation-reduction process
GO:0016491	molecular_function	oxidoreductase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	43.422
	SRR3591706	second leaf	25.263
	SRR3591707	mature leaf	85.955
	SRR3591708	Shoot apex	31.757
	SRR3591709	Stem	123.853
	SRR3591710	White floral bud	11.240
	SRR3591711	White flower	36.956
	SRR3591712	Green floral bud	5.335
	SRR3591713	Yellow flower	47.433
SRP173429	SRR8316895	Juvenile bud stage	10.459
	SRR8316896	Juvenile bud stage	8.301
	SRR8316897	Juvenile bud stage	4.073
	SRR8316894	Third green stage	2.522
	SRR8316900	Third green stage	2.008
	SRR8316901	Third green stage	2.164
	SRR8316898	Complete white stage	3.021
	SRR8316899	Complete white stage	9.678
	SRR8316903	Complete white stage	5.652
	SRR8316902	Silver flowering stage	2.727
	SRR8316904	Silver flowering stage	4.363
	SRR8316905	Silver flowering stage	1.067
	SRR8316906	Gold flowering stage	6.479
	SRR8316907	Gold flowering stage	10.291
	SRR8316908	Gold flowering stage	9.367
SRP132670	SRR6706286	Control	7.679
	SRR6706287	Light intensity 50%	4.814
	SRR6706288	Light intensity 20%	4.472
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	6.795
	CNS0095593	Slightly white alabastrum(diploid) 2	10.462
	CNS0095594	Slightly white alabastrum(diploid) 3	6.497
	CNS0095595	Whole white alabastrum(diploid) 2	9.647
	CNS0095596	Whole white alabastrum(diploid) 3	1.455
	CNS0095597	Whole white alabastrum(diploid) 4	4.043
	CNS0095598	Silvery flower (diploied) 1	51.491
	CNS0095599	Silvery flower (diploied) 2	40.550
	CNS0095600	Silvery flower (diploied) 3	21.440
	CNS0095601	Golden flower (diploid) 1	40.072
	CNS0095602	Golden flower (diploid) 2	51.616
	CNS0095603	Golden flower (diploid) 3	51.786
	CNS0095604	Slightly white alabastrum(tetraploid) 1	5.948
	CNS0095605	Slightly white alabastrum(tetraploid) 2	5.390
	CNS0095606	Slightly white alabastrum(tetraploid) 3	9.593
	CNS0095607	Whole white alabastrum(tetraploid) 1	5.834
	CNS0095608	Whole white alabastrum(tetraploid) 2	3.393
	CNS0095609	Whole white alabastrum(tetraploid) 3	0.632
	CNS0095610	Silvery flower (tetraploid) 1	18.333
	CNS0095611	Silvery flower (tetraploid) 2	25.657
	CNS0095612	Silvery flower (tetraploid) 3	11.395
	CNS0095613	Golden flower (tetraploid) 1	13.894
	CNS0095614	Golden flower (tetraploid) 2	19.736
	CNS0095615	Golden flower (tetraploid) 3	4.141
CRA001975	CRR073297	Stem 1	7.414
	CRR073298	Stem 2	3.361
	CRR073299	Stem 3	7.734
	CRR073300	Leaf 1	1.651
	CRR073301	Leaf 2	2.859
	CRR073302	Leaf 3	0.595
	CRR073303	Juvenile bud 1	1.751
	CRR073304	Juvenile bud 2	0.505
	CRR073305	Juvenile bud 3	2.604
	CRR073306	Third green 1	1.084
	CRR073307	Third green 2	1.649
	CRR073308	Third green 3	1.257
	CRR073309	Second white 1	6.050
	CRR073310	Second white 2	2.920
	CRR073311	Second white 3	3.815
	CRR073312	Silver flowering 1	2.756
	CRR073313	Silver flowering 2	6.141
	CRR073314	Silver flowering 3	5.521
	CRR073315	Gold flowering 1	67.784
	CRR073316	Gold flowering 2	77.788
	CRR073317	Gold flowering 3	60.773
	CRR073318	Tawny withering 1	31.894
	CRR073319	Tawny withering 2	31.680
	CRR073320	Tawny withering 3	30.598