Gene detail

Detail information of GWHGAAZE017544

Functional Annotation

Database	Orthologs	Annotation
Nr	XP_002323765.1	F-box family protein [Populus trichocarpa]
Swissprot	tr\|Q3EC97\|FBL14_ARATH	F-box/LRR-repeat protein 14
trEMBL	tr\|B9IJF9\|B9IJF9_POPTR	F-box family protein {ECO:0000313\|EMBL:EEF03898.1}
TAIR10	AT1G80570.3	RNI-like superfamily protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000005	gene	7732834	7734237	+
GWHAAZE00000005	mRNA	7732834	7734237	+
GWHAAZE00000005	exon	7732834	7734237	+
GWHAAZE00000005	CDS	7732834	7734237	+

Transcript Sequence
>GWHTAAZE017564 ATGGACAATTTGCCAGATCACTTGGCGTGGGAGATTTTGGGAAGAATTCAGAACACCGAAGACAGAAACTCAATATCCTTAGTTTGTAAACGCTTCCACAACCTTGATAATGTACGCCGAAATTATCTTCGGGTTGGCTGTGGTTTGAACCCCGCAAACGAAGCTTTAACCACCCTCTCCAACAGATTTCCCAATTTGGCAAAAGTCGAGGTTATCTACTCTGGCTGGATGTCCAAACTAGGCAAACAATTGGATGACCAAGGACTCAGTATTCTCTCAAACAACATCCCTTTTTTAAACGATCTTACCCTAAGTTACTGCACTTTTATCACTGATGCTGGTATTAGTGCATTGGCTTCTTGCTCCAAACTTTCTGCCTTAAAGTTGAATTTCACCCCAAGAATCACCGGTTTTGGCATATTATCGGTTGTTGTCGGCTGCAAAAATCTTCGAGCTCTTCACCTTATAAGATGTCTAAATATTAGCAGTGTTGAGTGGTTAGAGTATCTTGGTAAGCTCGAGACCCTTGAAAATCTCTCTATTAAAAACTGTAGGGCAATTGGAGAAGGGGACTTGATAAAATTCGGACGTAGTTGGCAAAAGATTAAGCGGTTGCAATTTGAAATTGATGCAAATTACCGTTATTTGAAGGTTTACAATCGGTTGGCTGTAGAACCGTGGCAAAAACAGTGGATACCGTGTGAAAATATGCTAGAGCTTAGCTTGGTGAATTGCATTATCAGCCCGGGGAGAGGGCTCGCTTGTGTATTGGACAAGTGCAAGAACCTTGAAAAGATTAACTTAGACATGTGTGTTGGGGTTAGAGATTGCGATATAATTGGCTTAGCTCGAAAATCAAGTAATCTTCATTCTATTTCTCTTCGAGTTGCATCAGATTTCTCTCTTCCTCTTTCAGAGGACAACCCATTGAGATTAACGGACGAGAGTTTAAAGGCATTGGCTCGAAACTGCTCACTGCTTGAATCTGTCAGTTTATCCTTTCCTGACGGGGAGTTTCCCTCACCCTCCTCGTTTTCCTTAAATGGAATCCTCAATTTGATCGAACTTTGCCCAATACGACAACTTGCTTTGGGTCATGTGTACACGTTTAACGATGATGGGATGGAAACTCTTTGTTCGGCTCAGTATCTTGAAACATTGGAGATTGTGAGATGCCAAGAGATTAGTGACGAGGGACTGAAGCTTGTGGTCCAGTTTCCTCGGCTGCGCATTTTACGAATTGGGAAGTGTTTGGGAGTTACAGATGAGGGTTTGAGGCCGCTTGTGGGATCGCGTAAATTGGAATTGTTGGGTGTGGATGATTGTCCGCGGATATCTGAAATGGGTGTTCAAGGTGCTGCAAAATCTGTGAGTTTCAAGCAAGATTTGTCATGGATGCATTGA

Network for GWHGAAZE017544

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF18511.2	F-box_5	3	40	2.30E-08
PF13516.7	LRR_6	98	119	0.079
PF13516.7	LRR_6	382	401	0.25

Protein Sequence

Gene family

Gene family	subfamily
Ubiquitin Family	F-box

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0005515	molecular_function	protein binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	5.226
	SRR3591706	second leaf	2.645
	SRR3591707	mature leaf	5.333
	SRR3591708	Shoot apex	5.594
	SRR3591709	Stem	6.751
	SRR3591710	White floral bud	7.123
	SRR3591711	White flower	10.698
	SRR3591712	Green floral bud	8.255
	SRR3591713	Yellow flower	11.686
SRP173429	SRR8316895	Juvenile bud stage	2.923
	SRR8316896	Juvenile bud stage	2.979
	SRR8316897	Juvenile bud stage	1.225
	SRR8316894	Third green stage	1.569
	SRR8316900	Third green stage	3.488
	SRR8316901	Third green stage	4.541
	SRR8316898	Complete white stage	2.587
	SRR8316899	Complete white stage	8.311
	SRR8316903	Complete white stage	3.855
	SRR8316902	Silver flowering stage	3.307
	SRR8316904	Silver flowering stage	5.033
	SRR8316905	Silver flowering stage	2.191
	SRR8316906	Gold flowering stage	8.787
	SRR8316907	Gold flowering stage	7.516
	SRR8316908	Gold flowering stage	6.795
SRP132670	SRR6706286	Control	3.465
	SRR6706287	Light intensity 50%	2.762
	SRR6706288	Light intensity 20%	2.975
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	3.885
	CNS0095593	Slightly white alabastrum(diploid) 2	3.032
	CNS0095594	Slightly white alabastrum(diploid) 3	3.356
	CNS0095595	Whole white alabastrum(diploid) 2	4.787
	CNS0095596	Whole white alabastrum(diploid) 3	4.584
	CNS0095597	Whole white alabastrum(diploid) 4	6.357
	CNS0095598	Silvery flower (diploied) 1	7.278
	CNS0095599	Silvery flower (diploied) 2	3.880
	CNS0095600	Silvery flower (diploied) 3	8.582
	CNS0095601	Golden flower (diploid) 1	8.581
	CNS0095602	Golden flower (diploid) 2	11.893
	CNS0095603	Golden flower (diploid) 3	12.023
	CNS0095604	Slightly white alabastrum(tetraploid) 1	1.968
	CNS0095605	Slightly white alabastrum(tetraploid) 2	1.849
	CNS0095606	Slightly white alabastrum(tetraploid) 3	2.100
	CNS0095607	Whole white alabastrum(tetraploid) 1	5.359
	CNS0095608	Whole white alabastrum(tetraploid) 2	6.850
	CNS0095609	Whole white alabastrum(tetraploid) 3	3.304
	CNS0095610	Silvery flower (tetraploid) 1	4.943
	CNS0095611	Silvery flower (tetraploid) 2	5.057
	CNS0095612	Silvery flower (tetraploid) 3	3.192
	CNS0095613	Golden flower (tetraploid) 1	4.733
	CNS0095614	Golden flower (tetraploid) 2	4.558
	CNS0095615	Golden flower (tetraploid) 3	4.827
CRA001975	CRR073297	Stem 1	4.197
	CRR073298	Stem 2	3.070
	CRR073299	Stem 3	3.047
	CRR073300	Leaf 1	4.244
	CRR073301	Leaf 2	4.177
	CRR073302	Leaf 3	3.496
	CRR073303	Juvenile bud 1	4.549
	CRR073304	Juvenile bud 2	2.985
	CRR073305	Juvenile bud 3	4.627
	CRR073306	Third green 1	1.693
	CRR073307	Third green 2	1.541
	CRR073308	Third green 3	1.878
	CRR073309	Second white 1	2.911
	CRR073310	Second white 2	3.345
	CRR073311	Second white 3	3.145
	CRR073312	Silver flowering 1	6.423
	CRR073313	Silver flowering 2	8.262
	CRR073314	Silver flowering 3	7.737
	CRR073315	Gold flowering 1	5.333
	CRR073316	Gold flowering 2	6.220
	CRR073317	Gold flowering 3	6.819
	CRR073318	Tawny withering 1	7.746
	CRR073319	Tawny withering 2	9.702
	CRR073320	Tawny withering 3	9.014