Detail information of GWHGAAZE017555


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_002304721.24.27331E-56hypothetical protein POPTR_0003s17900g [Populus trichocarpa]
Swissprottr|Q39262|ZFP3_ARATH6E-35Zinc finger protein 3
trEMBLtr|B9GVJ1|B9GVJ1_POPTR2E-56Uncharacterized protein {ECO:0000313|EMBL:EEE79700.2}
TAIR10AT5G10970.12E-32C2H2 and C2HC zinc fingers superfamily protein

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000005gene78801947880979-
GWHAAZE00000005mRNA78801947880979-
GWHAAZE00000005exon78801947880979-
GWHAAZE00000005CDS78801947880979-
Transcript Sequence

Network for GWHGAAZE017555

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
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Protein Sequence

Gene family

Gene familysubfamily
Transcription Factors FamilyC2H2

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName
GO:0003676molecular_functionnucleic acid binding

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf13.181
SRR3591706second leaf0.787
SRR3591707mature leaf2.239
SRR3591708Shoot apex3.455
SRR3591709Stem8.125
SRR3591710White floral bud4.344
SRR3591711White flower1.240
SRR3591712Green floral bud6.105
SRR3591713Yellow flower0.176
SRP173429 SRR8316895Juvenile bud stage 1.171
SRR8316896Juvenile bud stage 0.955
SRR8316897Juvenile bud stage 0.681
SRR8316894Third green stage 1.749
SRR8316900Third green stage 5.403
SRR8316901Third green stage 4.047
SRR8316898Complete white stage 0.797
SRR8316899Complete white stage 11.155
SRR8316903Complete white stage 0.711
SRR8316902Silver flowering stage0.093
SRR8316904Silver flowering stage0.382
SRR8316905Silver flowering stage0.000
SRR8316906Gold flowering stage 0.000
SRR8316907Gold flowering stage 0.000
SRR8316908Gold flowering stage 0.374
SRP132670SRR6706286Control1.078
SRR6706287Light intensity 50%1.274
SRR6706288Light intensity 20%1.316
CNP0000432CNS0095592Slightly white alabastrum(diploid) 11.386
CNS0095593Slightly white alabastrum(diploid) 22.846
CNS0095594Slightly white alabastrum(diploid) 32.099
CNS0095595Whole white alabastrum(diploid) 22.444
CNS0095596Whole white alabastrum(diploid) 32.094
CNS0095597Whole white alabastrum(diploid) 42.189
CNS0095598Silvery flower (diploied) 10.834
CNS0095599Silvery flower (diploied) 20.458
CNS0095600Silvery flower (diploied) 30.220
CNS0095601Golden flower (diploid) 10.000
CNS0095602Golden flower (diploid) 20.430
CNS0095603Golden flower (diploid) 30.390
CNS0095604Slightly white alabastrum(tetraploid) 11.921
CNS0095605Slightly white alabastrum(tetraploid) 20.864
CNS0095606Slightly white alabastrum(tetraploid) 33.397
CNS0095607Whole white alabastrum(tetraploid) 12.550
CNS0095608Whole white alabastrum(tetraploid) 21.456
CNS0095609Whole white alabastrum(tetraploid) 31.444
CNS0095610Silvery flower (tetraploid) 10.891
CNS0095611Silvery flower (tetraploid) 20.645
CNS0095612Silvery flower (tetraploid) 30.227
CNS0095613Golden flower (tetraploid) 10.090
CNS0095614Golden flower (tetraploid) 20.127
CNS0095615Golden flower (tetraploid) 30.214
CRA001975CRR073297Stem 13.140
CRR073298Stem 23.236
CRR073299Stem 33.791
CRR073300Leaf 17.310
CRR073301Leaf 27.220
CRR073302Leaf 38.641
CRR073303Juvenile bud 114.092
CRR073304Juvenile bud 24.737
CRR073305Juvenile bud 310.053
CRR073306Third green 11.076
CRR073307Third green 20.729
CRR073308Third green 31.175
CRR073309Second white 10.000
CRR073310Second white 20.000
CRR073311Second white 30.000
CRR073312Silver flowering 10.000
CRR073313Silver flowering 20.000
CRR073314Silver flowering 30.126
CRR073315Gold flowering 12.202
CRR073316Gold flowering 24.918
CRR073317Gold flowering 34.195
CRR073318Tawny withering 16.380
CRR073319Tawny withering 22.760
CRR073320Tawny withering 36.066