Detail information of GWHGAAZE017556


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_004235931.11.06377E-54PREDICTED: 60S ribosomal protein L7-1 [Solanum lycopersicum]
Swissprottr|Q9SAI5|RL71_ARATH8E-3260S ribosomal protein L7-1
trEMBLtr|K4BLK8|K4BLK8_SOLLC3E-54Uncharacterized protein {ECO:0000313|EnsemblPlants:Solyc03g117060.2.1}
TAIR10AT1G80750.12E-27Ribosomal protein L30/L7 family protein

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000005gene79250567926861+
GWHAAZE00000005mRNA79250567926861+
GWHAAZE00000005exon79250567925159+
GWHAAZE00000005exon79252237925360+
GWHAAZE00000005exon79262897926568+
GWHAAZE00000005exon79266647926861+
GWHAAZE00000005CDS79250567925159+
GWHAAZE00000005CDS79252237925360+
GWHAAZE00000005CDS79262897926568+
GWHAAZE00000005CDS79266647926861+
Transcript Sequence

Network for GWHGAAZE017556

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00327.21Ribosomal_L3038781.10E-11
Protein Sequence

Gene family

Gene familysubfamily
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KEGG pathway

KO Enzyme pathway mapID
K02937RP-L7e, RPL7 Ribosome map03010

Gene Ontology

GO term OntologyName

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf14.750
SRR3591706second leaf9.584
SRR3591707mature leaf8.301
SRR3591708Shoot apex13.733
SRR3591709Stem10.728
SRR3591710White floral bud6.089
SRR3591711White flower7.252
SRR3591712Green floral bud8.089
SRR3591713Yellow flower8.838
SRP173429 SRR8316895Juvenile bud stage 3.652
SRR8316896Juvenile bud stage 6.335
SRR8316897Juvenile bud stage 1.479
SRR8316894Third green stage 1.578
SRR8316900Third green stage 5.772
SRR8316901Third green stage 6.527
SRR8316898Complete white stage 1.937
SRR8316899Complete white stage 6.508
SRR8316903Complete white stage 4.550
SRR8316902Silver flowering stage3.421
SRR8316904Silver flowering stage3.701
SRR8316905Silver flowering stage1.257
SRR8316906Gold flowering stage 5.262
SRR8316907Gold flowering stage 3.968
SRR8316908Gold flowering stage 4.814
SRP132670SRR6706286Control1.176
SRR6706287Light intensity 50%0.898
SRR6706288Light intensity 20%1.337
CNP0000432CNS0095592Slightly white alabastrum(diploid) 16.694
CNS0095593Slightly white alabastrum(diploid) 24.434
CNS0095594Slightly white alabastrum(diploid) 34.394
CNS0095595Whole white alabastrum(diploid) 24.833
CNS0095596Whole white alabastrum(diploid) 35.140
CNS0095597Whole white alabastrum(diploid) 43.325
CNS0095598Silvery flower (diploied) 15.945
CNS0095599Silvery flower (diploied) 23.484
CNS0095600Silvery flower (diploied) 32.809
CNS0095601Golden flower (diploid) 14.596
CNS0095602Golden flower (diploid) 22.576
CNS0095603Golden flower (diploid) 31.671
CNS0095604Slightly white alabastrum(tetraploid) 14.740
CNS0095605Slightly white alabastrum(tetraploid) 27.190
CNS0095606Slightly white alabastrum(tetraploid) 37.563
CNS0095607Whole white alabastrum(tetraploid) 14.220
CNS0095608Whole white alabastrum(tetraploid) 22.272
CNS0095609Whole white alabastrum(tetraploid) 34.377
CNS0095610Silvery flower (tetraploid) 14.273
CNS0095611Silvery flower (tetraploid) 23.450
CNS0095612Silvery flower (tetraploid) 33.548
CNS0095613Golden flower (tetraploid) 14.953
CNS0095614Golden flower (tetraploid) 23.815
CNS0095615Golden flower (tetraploid) 31.941
CRA001975CRR073297Stem 11.113
CRR073298Stem 21.562
CRR073299Stem 30.540
CRR073300Leaf 11.960
CRR073301Leaf 20.919
CRR073302Leaf 30.064
CRR073303Juvenile bud 10.871
CRR073304Juvenile bud 20.218
CRR073305Juvenile bud 30.064
CRR073306Third green 10.011
CRR073307Third green 20.000
CRR073308Third green 30.070
CRR073309Second white 10.000
CRR073310Second white 20.000
CRR073311Second white 30.000
CRR073312Silver flowering 10.000
CRR073313Silver flowering 20.000
CRR073314Silver flowering 30.092
CRR073315Gold flowering 11.008
CRR073316Gold flowering 20.797
CRR073317Gold flowering 30.000
CRR073318Tawny withering 11.006
CRR073319Tawny withering 22.027
CRR073320Tawny withering 30.633