Detail information of GWHGAAZE017563


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_009631380.10PREDICTED: cinnamoyl-CoA reductase 1-like [Nicotiana tomentosiformis]
Swissprottr|Q9S9N9|CCR1_ARATH0Cinnamoyl-CoA reductase 1
trEMBLtr|A0A077D7R5|A0A077D7R5_TOBAC0Cinnamoyl-CoA reductase {ECO:0000313|EMBL:AIL30516.1}
TAIR10AT1G15950.16E-141cinnamoyl coa reductase 1

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000005gene80078258011359+
GWHAAZE00000005mRNA80078258011359+
GWHAAZE00000005exon80078258007945+
GWHAAZE00000005exon80080448008198+
GWHAAZE00000005exon80088878009072+
GWHAAZE00000005exon80094648009816+
GWHAAZE00000005exon80111768011359+
GWHAAZE00000005CDS80078258007945+
GWHAAZE00000005CDS80080448008198+
GWHAAZE00000005CDS80088878009072+
GWHAAZE00000005CDS80094648009816+
GWHAAZE00000005CDS80111768011359+
Transcript Sequence

Network for GWHGAAZE017563

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF01370.22Epimerase92403.50E-29
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K09753CCR Metabolic pathways map01100
Biosynthesis of secondary metabolitesmap01110
Phenylpropanoid biosynthesismap00940

Gene Ontology

GO term OntologyName
GO:0003824molecular_functioncatalytic activity
GO:0050662molecular_functioncoenzyme binding

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf368.477
SRR3591706second leaf108.739
SRR3591707mature leaf328.446
SRR3591708Shoot apex92.369
SRR3591709Stem1093.971
SRR3591710White floral bud151.348
SRR3591711White flower487.225
SRR3591712Green floral bud179.789
SRR3591713Yellow flower1278.276
SRP173429 SRR8316895Juvenile bud stage 214.397
SRR8316896Juvenile bud stage 276.261
SRR8316897Juvenile bud stage 67.440
SRR8316894Third green stage 76.016
SRR8316900Third green stage 192.858
SRR8316901Third green stage 210.610
SRR8316898Complete white stage 96.020
SRR8316899Complete white stage 275.225
SRR8316903Complete white stage 105.742
SRR8316902Silver flowering stage580.277
SRR8316904Silver flowering stage624.496
SRR8316905Silver flowering stage354.463
SRR8316906Gold flowering stage 2937.166
SRR8316907Gold flowering stage 2182.587
SRR8316908Gold flowering stage 3305.553
SRP132670SRR6706286Control275.044
SRR6706287Light intensity 50%267.467
SRR6706288Light intensity 20%272.685
CNP0000432CNS0095592Slightly white alabastrum(diploid) 191.951
CNS0095593Slightly white alabastrum(diploid) 285.392
CNS0095594Slightly white alabastrum(diploid) 3174.148
CNS0095595Whole white alabastrum(diploid) 270.051
CNS0095596Whole white alabastrum(diploid) 354.801
CNS0095597Whole white alabastrum(diploid) 470.434
CNS0095598Silvery flower (diploied) 1200.318
CNS0095599Silvery flower (diploied) 2140.926
CNS0095600Silvery flower (diploied) 3310.003
CNS0095601Golden flower (diploid) 1219.109
CNS0095602Golden flower (diploid) 2505.312
CNS0095603Golden flower (diploid) 3482.061
CNS0095604Slightly white alabastrum(tetraploid) 186.325
CNS0095605Slightly white alabastrum(tetraploid) 274.680
CNS0095606Slightly white alabastrum(tetraploid) 3154.673
CNS0095607Whole white alabastrum(tetraploid) 154.002
CNS0095608Whole white alabastrum(tetraploid) 242.871
CNS0095609Whole white alabastrum(tetraploid) 3193.050
CNS0095610Silvery flower (tetraploid) 1340.258
CNS0095611Silvery flower (tetraploid) 2212.216
CNS0095612Silvery flower (tetraploid) 3106.227
CNS0095613Golden flower (tetraploid) 1524.898
CNS0095614Golden flower (tetraploid) 2655.553
CNS0095615Golden flower (tetraploid) 3230.159
CRA001975CRR073297Stem 1162.141
CRR073298Stem 2168.057
CRR073299Stem 3192.238
CRR073300Leaf 199.208
CRR073301Leaf 2108.461
CRR073302Leaf 3150.678
CRR073303Juvenile bud 176.739
CRR073304Juvenile bud 264.686
CRR073305Juvenile bud 3131.679
CRR073306Third green 1358.255
CRR073307Third green 2197.454
CRR073308Third green 3265.322
CRR073309Second white 1645.988
CRR073310Second white 2620.875
CRR073311Second white 31051.453
CRR073312Silver flowering 12489.587
CRR073313Silver flowering 22814.740
CRR073314Silver flowering 32420.390
CRR073315Gold flowering 1371.880
CRR073316Gold flowering 2280.537
CRR073317Gold flowering 3407.185
CRR073318Tawny withering 1494.896
CRR073319Tawny withering 2381.174
CRR073320Tawny withering 3489.565