Gene detail

Detail information of GWHGAAZE017565

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	AAG35658.1AF204925_1	1.2157E-134	transcription factor WRKY4 [Petroselinum crispum]
Swissprot	tr\|Q9SAH7\|WRK40_ARATH	9E-92	Probable WRKY transcription factor 40
trEMBL	tr\|Q9FR29\|Q9FR29_PETCR	5E-135	Transcription factor WRKY4 {ECO:0000313\|EMBL:AAG35658.1}
TAIR10	AT1G80840.1	1E-68	WRKY DNA-binding protein 40

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000005	gene	8056533	8058392	+
GWHAAZE00000005	mRNA	8056533	8058392	+
GWHAAZE00000005	exon	8056533	8056610	+
GWHAAZE00000005	exon	8056717	8056776	+
GWHAAZE00000005	exon	8057124	8057465	+
GWHAAZE00000005	exon	8057656	8057772	+
GWHAAZE00000005	exon	8058027	8058392	+
GWHAAZE00000005	CDS	8056533	8056610	+
GWHAAZE00000005	CDS	8056717	8056776	+
GWHAAZE00000005	CDS	8057124	8057465	+
GWHAAZE00000005	CDS	8057656	8057772	+
GWHAAZE00000005	CDS	8058027	8058392	+

Transcript Sequence
>GWHTAAZE017585 ATGGAATACACTAGTTTGATTGATACCTCATTGGATCTTAACACCATTAATCCTCTCCAACTTCTCATCCAAACTCCAAAGCAAGAGGTGCAAAGCAATTTCATTGACCCTGGAATGAACATTTCGGTTAAAGAAGAGACAGACGCTTTATTAGAGGAATTGAACAGGGTGAATACAGAGAACAAGAAGCTAACCGAAATGCTAACGGTTGCTTGTGAGAATTATAACGCTTTGCATAGCCAAATGATGGACTATATAAGCAACAACCCCGGCCTGGATACTAGTAATTCACCATTTCGGAAGAGGAAATCCGAAAGTACCACCAATATTATTGTAAATAATAATAACAATGATGGACGCAATGCAATGTCAGAGAGTAGCTCAAGTGATGAAGATTCTTGCAAGAAACTAAGAAGAGAGCAAATCAAGGCCAAGATTTCAAGGTCCTATGTAAAGACCGAAGCATCCGATTCTAGCCTCATAGTGAAGGATGGATATCAATGGAGGAAATATGGCCAAAAGGTTACTAGAGACAACCCTTGTCCCAGAGCTTACTTCAAATGCTCTTTTGCTCCTAGTTGTCCTGTCAAAAAGAAGGTGCAAAGAAGTGTGGAGGATCAATCAATTGTGGTAGCAACTTATGAAGGAGAGCACAACCATCCACACCCTCCCAGAATCGAGGCTAGCTCTGGTGTCTCAAACCGGGCTGCAACAACAGGGTCAGGAACATGCACGGCCTCCCTAGGCTCATCTGGACCTGCTGTTACGCTGGATTTAACCAAGGGACCTAAAGCTAAAACTAATGATTCCAAAGTGAGCAGCAGTGAAAGAAGCAGAGTGGTGGATTCGCCTCAGTTTCAGCAGTTTTTGGTGGATCAAATGGCTAATTCCTTAACTAAAGATCCTAGTTTCAAAGCTGCACTCGCCGCTGCCATTTCAGGAAGATTTCTCCAGCATAGTTAG

Network for GWHGAAZE017565

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF03106.16	WRKY	163	221	3.60E-23

Protein Sequence

Gene family

Gene family	subfamily
Transcription Factors Family	WRKY

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006355	biological_process	regulation of transcription, DNA-templated
GO:0003700	molecular_function	DNA-binding transcription factor activity
GO:0043565	molecular_function	sequence-specific DNA binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	75.582
	SRR3591706	second leaf	49.922
	SRR3591707	mature leaf	45.458
	SRR3591708	Shoot apex	39.328
	SRR3591709	Stem	162.774
	SRR3591710	White floral bud	118.868
	SRR3591711	White flower	141.840
	SRR3591712	Green floral bud	24.321
	SRR3591713	Yellow flower	73.974
SRP173429	SRR8316895	Juvenile bud stage	111.466
	SRR8316896	Juvenile bud stage	37.429
	SRR8316897	Juvenile bud stage	80.201
	SRR8316894	Third green stage	9.752
	SRR8316900	Third green stage	9.243
	SRR8316901	Third green stage	25.810
	SRR8316898	Complete white stage	1.862
	SRR8316899	Complete white stage	125.011
	SRR8316903	Complete white stage	10.305
	SRR8316902	Silver flowering stage	3.272
	SRR8316904	Silver flowering stage	5.743
	SRR8316905	Silver flowering stage	3.537
	SRR8316906	Gold flowering stage	28.869
	SRR8316907	Gold flowering stage	18.265
	SRR8316908	Gold flowering stage	40.750
SRP132670	SRR6706286	Control	6.258
	SRR6706287	Light intensity 50%	10.223
	SRR6706288	Light intensity 20%	5.367
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	106.990
	CNS0095593	Slightly white alabastrum(diploid) 2	152.173
	CNS0095594	Slightly white alabastrum(diploid) 3	148.231
	CNS0095595	Whole white alabastrum(diploid) 2	88.434
	CNS0095596	Whole white alabastrum(diploid) 3	10.940
	CNS0095597	Whole white alabastrum(diploid) 4	87.933
	CNS0095598	Silvery flower (diploied) 1	378.914
	CNS0095599	Silvery flower (diploied) 2	296.828
	CNS0095600	Silvery flower (diploied) 3	103.226
	CNS0095601	Golden flower (diploid) 1	402.888
	CNS0095602	Golden flower (diploid) 2	220.708
	CNS0095603	Golden flower (diploid) 3	220.050
	CNS0095604	Slightly white alabastrum(tetraploid) 1	4.712
	CNS0095605	Slightly white alabastrum(tetraploid) 2	2.588
	CNS0095606	Slightly white alabastrum(tetraploid) 3	7.341
	CNS0095607	Whole white alabastrum(tetraploid) 1	3.228
	CNS0095608	Whole white alabastrum(tetraploid) 2	1.209
	CNS0095609	Whole white alabastrum(tetraploid) 3	0.929
	CNS0095610	Silvery flower (tetraploid) 1	20.444
	CNS0095611	Silvery flower (tetraploid) 2	10.316
	CNS0095612	Silvery flower (tetraploid) 3	11.950
	CNS0095613	Golden flower (tetraploid) 1	18.636
	CNS0095614	Golden flower (tetraploid) 2	21.817
	CNS0095615	Golden flower (tetraploid) 3	7.165
CRA001975	CRR073297	Stem 1	26.826
	CRR073298	Stem 2	21.554
	CRR073299	Stem 3	22.265
	CRR073300	Leaf 1	14.555
	CRR073301	Leaf 2	19.175
	CRR073302	Leaf 3	8.592
	CRR073303	Juvenile bud 1	5.819
	CRR073304	Juvenile bud 2	10.701
	CRR073305	Juvenile bud 3	14.826
	CRR073306	Third green 1	0.155
	CRR073307	Third green 2	0.397
	CRR073308	Third green 3	2.611
	CRR073309	Second white 1	0.341
	CRR073310	Second white 2	0.741
	CRR073311	Second white 3	1.396
	CRR073312	Silver flowering 1	7.865
	CRR073313	Silver flowering 2	4.374
	CRR073314	Silver flowering 3	3.684
	CRR073315	Gold flowering 1	42.563
	CRR073316	Gold flowering 2	105.273
	CRR073317	Gold flowering 3	63.129
	CRR073318	Tawny withering 1	51.548
	CRR073319	Tawny withering 2	270.301
	CRR073320	Tawny withering 3	90.974