Detail information of GWHGAAZE017568


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_006493356.11.74292E-38PREDICTED: uncharacterized protein LOC102616857 [Citrus sinensis]
Swissprottr|Q9SAH5|PLMT_ARATH1E-33Phosphatidyl-N-methylethanolamine N-methyltransferase
trEMBLtr|A0A067DR19|A0A067DR19_CITSI7E-39Uncharacterized protein {ECO:0000313|EMBL:KDO44015.1}
TAIR10AT1G80860.27E-18phospholipid N-methyltransferase

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000005gene80757038075981+
GWHAAZE00000005mRNA80757038075981+
GWHAAZE00000005exon80757038075981+
GWHAAZE00000005CDS80757038075981+
Transcript Sequence

Network for GWHGAAZE017568

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
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Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K00550PLMT Metabolic pathways map01100
Biosynthesis of secondary metabolitesmap01110
Glycerophospholipid metabolismmap00564

Gene Ontology

GO term OntologyName

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf0.851
SRR3591706second leaf1.715
SRR3591707mature leaf0.683
SRR3591708Shoot apex0.784
SRR3591709Stem0.295
SRR3591710White floral bud1.482
SRR3591711White flower0.258
SRR3591712Green floral bud3.263
SRR3591713Yellow flower0.764
SRP173429 SRR8316895Juvenile bud stage 0.794
SRR8316896Juvenile bud stage 0.869
SRR8316897Juvenile bud stage 0.037
SRR8316894Third green stage 0.087
SRR8316900Third green stage 2.117
SRR8316901Third green stage 2.500
SRR8316898Complete white stage 0.000
SRR8316899Complete white stage 0.541
SRR8316903Complete white stage 0.000
SRR8316902Silver flowering stage0.000
SRR8316904Silver flowering stage0.119
SRR8316905Silver flowering stage0.000
SRR8316906Gold flowering stage 0.001
SRR8316907Gold flowering stage 0.000
SRR8316908Gold flowering stage 0.207
SRP132670SRR6706286Control1.812
SRR6706287Light intensity 50%1.482
SRR6706288Light intensity 20%1.137
CNP0000432CNS0095592Slightly white alabastrum(diploid) 12.313
CNS0095593Slightly white alabastrum(diploid) 23.010
CNS0095594Slightly white alabastrum(diploid) 30.576
CNS0095595Whole white alabastrum(diploid) 21.408
CNS0095596Whole white alabastrum(diploid) 35.682
CNS0095597Whole white alabastrum(diploid) 45.098
CNS0095598Silvery flower (diploied) 10.000
CNS0095599Silvery flower (diploied) 20.189
CNS0095600Silvery flower (diploied) 30.431
CNS0095601Golden flower (diploid) 10.366
CNS0095602Golden flower (diploid) 20.889
CNS0095603Golden flower (diploid) 30.247
CNS0095604Slightly white alabastrum(tetraploid) 13.668
CNS0095605Slightly white alabastrum(tetraploid) 22.035
CNS0095606Slightly white alabastrum(tetraploid) 32.795
CNS0095607Whole white alabastrum(tetraploid) 16.183
CNS0095608Whole white alabastrum(tetraploid) 22.647
CNS0095609Whole white alabastrum(tetraploid) 31.870
CNS0095610Silvery flower (tetraploid) 10.191
CNS0095611Silvery flower (tetraploid) 20.206
CNS0095612Silvery flower (tetraploid) 30.128
CNS0095613Golden flower (tetraploid) 10.174
CNS0095614Golden flower (tetraploid) 20.000
CNS0095615Golden flower (tetraploid) 30.000
CRA001975CRR073297Stem 10.094
CRR073298Stem 20.427
CRR073299Stem 30.104
CRR073300Leaf 10.840
CRR073301Leaf 21.362
CRR073302Leaf 30.329
CRR073303Juvenile bud 11.102
CRR073304Juvenile bud 20.123
CRR073305Juvenile bud 30.591
CRR073306Third green 10.000
CRR073307Third green 20.000
CRR073308Third green 30.000
CRR073309Second white 10.008
CRR073310Second white 20.052
CRR073311Second white 30.000
CRR073312Silver flowering 10.000
CRR073313Silver flowering 20.214
CRR073314Silver flowering 30.000
CRR073315Gold flowering 10.639
CRR073316Gold flowering 20.160
CRR073317Gold flowering 31.262
CRR073318Tawny withering 10.448
CRR073319Tawny withering 21.090
CRR073320Tawny withering 30.027