Detail information of GWHGAAZE017570


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_004290300.14.77946E-16PREDICTED: uncharacterized protein LOC101298761 [Fragaria vesca subsp. vesca]

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000005gene80873548088770-
GWHAAZE00000005mRNA80873548088770-
GWHAAZE00000005exon80873548087461-
GWHAAZE00000005exon80875708087800-
GWHAAZE00000005exon80878828087974-
GWHAAZE00000005exon80880758088159-
GWHAAZE00000005exon80882778088484-
GWHAAZE00000005exon80885728088770-
GWHAAZE00000005CDS80885728088770-
GWHAAZE00000005CDS80882778088484-
GWHAAZE00000005CDS80880758088159-
GWHAAZE00000005CDS80878828087974-
GWHAAZE00000005CDS80875708087800-
GWHAAZE00000005CDS80873548087461-
Transcript Sequence

Network for GWHGAAZE017570

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
----------
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K01868TARS, thrS Aminoacyl-tRNA biosynthesis map00970

Gene Ontology

GO term OntologyName

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf1.103
SRR3591706second leaf2.038
SRR3591707mature leaf0.408
SRR3591708Shoot apex4.483
SRR3591709Stem1.656
SRR3591710White floral bud0.526
SRR3591711White flower1.084
SRR3591712Green floral bud2.129
SRR3591713Yellow flower0.009
SRP173429 SRR8316895Juvenile bud stage 2.230
SRR8316896Juvenile bud stage 3.651
SRR8316897Juvenile bud stage 0.980
SRR8316894Third green stage 1.435
SRR8316900Third green stage 3.848
SRR8316901Third green stage 2.101
SRR8316898Complete white stage 0.324
SRR8316899Complete white stage 0.628
SRR8316903Complete white stage 0.561
SRR8316902Silver flowering stage0.034
SRR8316904Silver flowering stage0.227
SRR8316905Silver flowering stage0.106
SRR8316906Gold flowering stage 0.598
SRR8316907Gold flowering stage 0.521
SRR8316908Gold flowering stage 0.573
SRP132670SRR6706286Control1.352
SRR6706287Light intensity 50%1.878
SRR6706288Light intensity 20%1.963
CNP0000432CNS0095592Slightly white alabastrum(diploid) 14.687
CNS0095593Slightly white alabastrum(diploid) 23.257
CNS0095594Slightly white alabastrum(diploid) 32.106
CNS0095595Whole white alabastrum(diploid) 22.043
CNS0095596Whole white alabastrum(diploid) 32.006
CNS0095597Whole white alabastrum(diploid) 41.176
CNS0095598Silvery flower (diploied) 12.857
CNS0095599Silvery flower (diploied) 23.338
CNS0095600Silvery flower (diploied) 30.628
CNS0095601Golden flower (diploid) 13.317
CNS0095602Golden flower (diploid) 21.477
CNS0095603Golden flower (diploid) 31.092
CNS0095604Slightly white alabastrum(tetraploid) 11.026
CNS0095605Slightly white alabastrum(tetraploid) 21.048
CNS0095606Slightly white alabastrum(tetraploid) 30.841
CNS0095607Whole white alabastrum(tetraploid) 10.275
CNS0095608Whole white alabastrum(tetraploid) 20.000
CNS0095609Whole white alabastrum(tetraploid) 31.072
CNS0095610Silvery flower (tetraploid) 10.240
CNS0095611Silvery flower (tetraploid) 20.000
CNS0095612Silvery flower (tetraploid) 30.229
CNS0095613Golden flower (tetraploid) 10.000
CNS0095614Golden flower (tetraploid) 20.073
CNS0095615Golden flower (tetraploid) 30.000
CRA001975CRR073297Stem 11.528
CRR073298Stem 20.841
CRR073299Stem 30.090
CRR073300Leaf 10.845
CRR073301Leaf 20.721
CRR073302Leaf 30.000
CRR073303Juvenile bud 10.000
CRR073304Juvenile bud 20.000
CRR073305Juvenile bud 30.000
CRR073306Third green 10.000
CRR073307Third green 20.000
CRR073308Third green 30.002
CRR073309Second white 10.000
CRR073310Second white 20.000
CRR073311Second white 30.000
CRR073312Silver flowering 10.000
CRR073313Silver flowering 20.000
CRR073314Silver flowering 30.000
CRR073315Gold flowering 10.025
CRR073316Gold flowering 20.191
CRR073317Gold flowering 30.000
CRR073318Tawny withering 10.043
CRR073319Tawny withering 20.338
CRR073320Tawny withering 30.013