Gene detail

Detail information of GWHGAAZE017574

Functional Annotation

Database	Orthologs	Annotation
Nr	XP_010656612.1	PREDICTED: probable cyclic nucleotide-gated ion channel 5 isoform X2 [Vitis vinifera]
Swissprot	tr\|Q9M0A4\|CNGC9_ARATH	Putative cyclic nucleotide-gated ion channel 9
trEMBL	tr\|A0A067LBU5\|A0A067LBU5_JATCU	Uncharacterized protein {ECO:0000313\|EMBL:KDP41965.1}
TAIR10	AT4G30560.1	cyclic nucleotide gated channel 9

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000005	gene	8118964	8121323	-
GWHAAZE00000005	mRNA	8118964	8121323	-
GWHAAZE00000005	exon	8118964	8119102	-
GWHAAZE00000005	exon	8119226	8119680	-
GWHAAZE00000005	exon	8120051	8120287	-
GWHAAZE00000005	exon	8120429	8120540	-
GWHAAZE00000005	exon	8120747	8121051	-
GWHAAZE00000005	exon	8121133	8121323	-
GWHAAZE00000005	five_prime_UTR	8121268	8121323	-
GWHAAZE00000005	CDS	8121133	8121267	-
GWHAAZE00000005	CDS	8120747	8121051	-
GWHAAZE00000005	CDS	8120429	8120540	-
GWHAAZE00000005	CDS	8120051	8120287	-
GWHAAZE00000005	CDS	8119226	8119680	-
GWHAAZE00000005	CDS	8118964	8119102	-

Transcript Sequence
>GWHTAAZE017594 GAAATAAAGAGGGCGGAGATGTACTGGCTACAAAACAGGCTTTACTGCACATTGTAATGTTTCAGTATATTTTTAGGGCTTGGCGGTTCTACCCGTTAACTTCTGAGCTGAAAAAGACTGTGGGGGTCTTTGCTGATTCTGCTTGGGCTGGTGCTGCATTTTACTTGTTGTTGTTTGTTCTTGCTAGCCATATAGTTGGTGCTTTCTGGTACCTATTAGCCGTGGATCGTAAAGATACATGCTGGGAGATAGCTTGTATAGGTAGCGGCAAGTGTGATATAAGATACTTGTATTGCGGACACAAGAAGACGCTAGAATATAAACAATGGAAAAATATCAGCAAAAAGATACTCAATTCAAATTGCTCTGTTAGTGAAGAAAATCCAAAATTTGATTATGGAATTTACACTCGAGCTTTATCTTCGGGTATTGTTGAATCTGAGCACTTCCCCACCAAATACTTTTTCTGTCTGTGGTTTGGCCTACAAAACTTGAGTACGCTTGGTCAGGGGCTTGAAACCAGCACCTTTCATGAAGAGGTTATATTTTCCATATTTGTTGCCATTTTTGGGCTCATTCTCTTTGCTCTTCTGATCGGTAACATGCAAACCTATCTTCAATCCATTACGGTCCGTCTTGAGGAGATGAGAATCAAAAGGCGAGATTCTGAGCAGTGGATGCATCATAGATTACTTCCACAGGAGCTTAGAGAAAGAGTTCGCCGCTACGATCAGTACAAGTGGCTCGAAACGAGAGGAGTAGATGAAGAGAGCTTGGTCCAGAGTCTACCGAAAGATCTTAGGAGAGATATCAAGCGCCATCTCTGTTTGAATTTGGTGAGACGGGTCCCTCTGTTTGCAAATATGGACGAACAACTACTTGACGCAATTTGTGAGCGACTAAAGCCAAGTTTATACACAGAGGGTACATATGTAGTTCGAGAAATGGACCCGGTTAACGAGATGCTCTTCATTATCCGTGGTCGCCTTGAGAGTACAACCACTGACGGTGGTAGGAGTGGTTTTTTCAACCGGGGTTTCTTAAAGGAAGGCGATTTTTGTGGTGAGGAGCTTTTGACATGGGCCCTTGATCCTAAAGCCGGCTCTAATCTACCACCATCAACTCGAACTGTTCAGGCATTAACGGAAGTGGAGGCTTTTGCATTAATAGCCGAGGAAATGAAGTTCATTACATCCCAATTTAGAAGGCTGCACAGCCGGCAAGTTCAGCACACTTTCCGGTTTTACTCGCAGCAGTGGAGGACGTGGGCTGCCACTTTCATACAAGCGGCTTGGCGGCGCTTTGGTGCAACCATGTTGGCCTCGAAGTTTGCGGCTAATGCTCTTCGAGGGGTTCATAGACTACGCAGTACGAGGAGTTCTAGGGGTCTGATGAATCTGCCTAAACCTCCGGAGCCTGATTTTGGGTCTGCAGATTAA

Network for GWHGAAZE017574

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00520.32	Ion_trans	3	193	4.00E-18
PF00027.30	cNMP_binding	287	376	9.90E-08

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K05391	CNGC	Plant-pathogen interaction	map04626

Gene Ontology

GO term	Ontology	Name
GO:0006811	biological_process	ion transport
GO:0055085	biological_process	transmembrane transport
GO:0016020	cellular_component	membrane
GO:0005216	molecular_function	ion channel activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	0.921
	SRR3591706	second leaf	0.254
	SRR3591707	mature leaf	0.067
	SRR3591708	Shoot apex	0.489
	SRR3591709	Stem	0.992
	SRR3591710	White floral bud	57.300
	SRR3591711	White flower	1.824
	SRR3591712	Green floral bud	22.889
	SRR3591713	Yellow flower	0.658
SRP173429	SRR8316895	Juvenile bud stage	4.246
	SRR8316896	Juvenile bud stage	6.636
	SRR8316897	Juvenile bud stage	2.021
	SRR8316894	Third green stage	2.809
	SRR8316900	Third green stage	15.950
	SRR8316901	Third green stage	13.721
	SRR8316898	Complete white stage	5.737
	SRR8316899	Complete white stage	2.228
	SRR8316903	Complete white stage	8.857
	SRR8316902	Silver flowering stage	1.815
	SRR8316904	Silver flowering stage	3.843
	SRR8316905	Silver flowering stage	0.932
	SRR8316906	Gold flowering stage	2.370
	SRR8316907	Gold flowering stage	2.049
	SRR8316908	Gold flowering stage	0.769
SRP132670	SRR6706286	Control	9.465
	SRR6706287	Light intensity 50%	10.894
	SRR6706288	Light intensity 20%	9.858
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	13.576
	CNS0095593	Slightly white alabastrum(diploid) 2	11.089
	CNS0095594	Slightly white alabastrum(diploid) 3	10.845
	CNS0095595	Whole white alabastrum(diploid) 2	26.650
	CNS0095596	Whole white alabastrum(diploid) 3	33.652
	CNS0095597	Whole white alabastrum(diploid) 4	44.397
	CNS0095598	Silvery flower (diploied) 1	4.665
	CNS0095599	Silvery flower (diploied) 2	8.738
	CNS0095600	Silvery flower (diploied) 3	2.844
	CNS0095601	Golden flower (diploid) 1	5.129
	CNS0095602	Golden flower (diploid) 2	2.483
	CNS0095603	Golden flower (diploid) 3	2.479
	CNS0095604	Slightly white alabastrum(tetraploid) 1	18.153
	CNS0095605	Slightly white alabastrum(tetraploid) 2	16.829
	CNS0095606	Slightly white alabastrum(tetraploid) 3	4.325
	CNS0095607	Whole white alabastrum(tetraploid) 1	44.128
	CNS0095608	Whole white alabastrum(tetraploid) 2	54.386
	CNS0095609	Whole white alabastrum(tetraploid) 3	24.032
	CNS0095610	Silvery flower (tetraploid) 1	2.694
	CNS0095611	Silvery flower (tetraploid) 2	4.710
	CNS0095612	Silvery flower (tetraploid) 3	31.613
	CNS0095613	Golden flower (tetraploid) 1	1.768
	CNS0095614	Golden flower (tetraploid) 2	0.335
	CNS0095615	Golden flower (tetraploid) 3	5.355
CRA001975	CRR073297	Stem 1	8.118
	CRR073298	Stem 2	7.479
	CRR073299	Stem 3	3.100
	CRR073300	Leaf 1	15.785
	CRR073301	Leaf 2	10.611
	CRR073302	Leaf 3	7.107
	CRR073303	Juvenile bud 1	19.471
	CRR073304	Juvenile bud 2	13.353
	CRR073305	Juvenile bud 3	5.805
	CRR073306	Third green 1	18.005
	CRR073307	Third green 2	18.372
	CRR073308	Third green 3	18.126
	CRR073309	Second white 1	4.839
	CRR073310	Second white 2	5.540
	CRR073311	Second white 3	4.133
	CRR073312	Silver flowering 1	11.381
	CRR073313	Silver flowering 2	14.542
	CRR073314	Silver flowering 3	6.348
	CRR073315	Gold flowering 1	11.599
	CRR073316	Gold flowering 2	6.632
	CRR073317	Gold flowering 3	5.488
	CRR073318	Tawny withering 1	8.981
	CRR073319	Tawny withering 2	8.327
	CRR073320	Tawny withering 3	9.651