Gene detail

Detail information of GWHGAAZE017584

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_011020562.1	0	PREDICTED: AP2-like ethylene-responsive transcription factor At1g16060 isoform X1 [Populus euphratica]
Swissprot	tr\|Q94AN4\|AP2L1_ARATH	9E-111	AP2-like ethylene-responsive transcription factor At1g16060
trEMBL	tr\|U5GNH0\|U5GNH0_POPTR	3E-179	Uncharacterized protein {ECO:0000313\|EMBL:ERP63734.1}
TAIR10	AT1G16060.1	1E-76	ARIA-interacting double AP2 domain protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000005	gene	8225601	8229530	+
GWHAAZE00000005	mRNA	8225601	8229530	+
GWHAAZE00000005	exon	8225601	8225908	+
GWHAAZE00000005	exon	8226007	8226089	+
GWHAAZE00000005	exon	8226365	8226453	+
GWHAAZE00000005	exon	8226538	8226590	+
GWHAAZE00000005	exon	8226743	8226793	+
GWHAAZE00000005	exon	8227391	8227467	+
GWHAAZE00000005	exon	8229001	8229530	+
GWHAAZE00000005	five_prime_UTR	8225601	8225750	+
GWHAAZE00000005	CDS	8225751	8225908	+
GWHAAZE00000005	CDS	8226007	8226089	+
GWHAAZE00000005	CDS	8226365	8226453	+
GWHAAZE00000005	CDS	8226538	8226590	+
GWHAAZE00000005	CDS	8226743	8226793	+
GWHAAZE00000005	CDS	8227391	8227467	+
GWHAAZE00000005	CDS	8229001	8229530	+

Transcript Sequence
>GWHTAAZE017604 TAATTTGCCAACCCCAACCCCTATTCTTATTTCCTTTATATCCCCTTCTTATTGGATGATGACTTAGTCTTCTTATTGAAATCCTATCTCTCTCTCTCGTTTTTCTCCCCTGTTTCATTTTTAACTCACAAAAAAGCCTTTTCTTTCTAAATGACGAAGACCTCACAGAAGAAGAACAGTTCAAACAGTGCTAGCAGCAGCAGCAGCAGCATTACTAAGCCCATTCCCACTAAGACTAAGCGCACCCGCAAGAGCGTCCCTCGCGATTCTCCTCCCCAACGCAGCTCAATTTACAGGGGTGTCACTAGGCACCGGTGGACCGGTCGATATGAAGCTCATTTGTGGGACAAGAATTGCTGGAACGAAGCACAGAACAAGAAAGGAAGACAAGGGGCGTATGATGATGAAGAAGCAGCTGCACATGCTTATGACTTGGCAGCATTGAAGTACTGGGGACAAGACACTATTCTCAATTTCCCACTCTCCACGTATCAAGAAGAGCTTAAAGATATGGAAGGTCAGTCGAAAGAAGAGAAAAGTAGCGGTTTTTCTCGGGGAGTCTCTAAATATAGAGGTGTGGCAAGGCACCACCACAATGGAAGATGGGAGGCTCGTATTGGCAGGGTATTTGGCAACAAATATCTCTATCTTGGAACTTATGCTACCCAAGAAGAAGCGGCCACTGCATATGACATGGCAGCCATAGAATACCGTGGACTTAACGCCGTTACCAACTTTGACCTCAGCCGTTACATCAAGTGGCTACGTCCCAACCAAAGTGGTAACATCCCTATCGACCCTGAACTAAACCCTAACCCTAACGTCGACGAAAACGTTGCGATTCCAAATCTTAGCGATGAGGAACTCGGGTTAGGATTTCTCCAGGAAAGCACTAGCTCCGGCGAAACAAGCATACCGCCTCCGCGCCCGTCCGGCGGAACCACCGCTTCGTCGGCGCTAGGGCTCCTTCTCCAATCGTCCAAATTTAAGGAAATGCTCGAGAGAACTTCGGCCGCCGATTGCCCGTCGACACCTCCTGAGTCAGATCCACCACGGCGGAGCTTCCCCGACGACATACAAACGTATTTCGACTGTCACGATTCGAGCAGTTATACGGACGGTGACGATATAATCTTCGGTGAATTGAATTCGTTTGCATCGCCAATGTTTCAATGCGAGCTCGACGCGTAA

Network for GWHGAAZE017584

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00847.21	AP2	47	102	1.00E-08
PF00847.21	AP2	138	189	7.00E-12

Protein Sequence

Gene family

Gene family	subfamily
Transcription Factors Family	AP2/ERF-AP2

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006355	biological_process	regulation of transcription, DNA-templated
GO:0003700	molecular_function	DNA-binding transcription factor activity
GO:0003677	molecular_function	DNA binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	2.763
	SRR3591706	second leaf	25.698
	SRR3591707	mature leaf	1.650
	SRR3591708	Shoot apex	14.901
	SRR3591709	Stem	1.477
	SRR3591710	White floral bud	2.033
	SRR3591711	White flower	1.072
	SRR3591712	Green floral bud	5.729
	SRR3591713	Yellow flower	0.337
SRP173429	SRR8316895	Juvenile bud stage	5.031
	SRR8316896	Juvenile bud stage	5.810
	SRR8316897	Juvenile bud stage	3.611
	SRR8316894	Third green stage	2.393
	SRR8316900	Third green stage	9.898
	SRR8316901	Third green stage	7.453
	SRR8316898	Complete white stage	0.873
	SRR8316899	Complete white stage	8.273
	SRR8316903	Complete white stage	0.966
	SRR8316902	Silver flowering stage	0.487
	SRR8316904	Silver flowering stage	0.215
	SRR8316905	Silver flowering stage	0.186
	SRR8316906	Gold flowering stage	0.935
	SRR8316907	Gold flowering stage	0.723
	SRR8316908	Gold flowering stage	1.005
SRP132670	SRR6706286	Control	7.266
	SRR6706287	Light intensity 50%	7.821
	SRR6706288	Light intensity 20%	8.267
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	7.021
	CNS0095593	Slightly white alabastrum(diploid) 2	6.386
	CNS0095594	Slightly white alabastrum(diploid) 3	7.399
	CNS0095595	Whole white alabastrum(diploid) 2	5.194
	CNS0095596	Whole white alabastrum(diploid) 3	4.053
	CNS0095597	Whole white alabastrum(diploid) 4	3.131
	CNS0095598	Silvery flower (diploied) 1	2.223
	CNS0095599	Silvery flower (diploied) 2	3.406
	CNS0095600	Silvery flower (diploied) 3	1.301
	CNS0095601	Golden flower (diploid) 1	0.441
	CNS0095602	Golden flower (diploid) 2	1.344
	CNS0095603	Golden flower (diploid) 3	1.178
	CNS0095604	Slightly white alabastrum(tetraploid) 1	8.929
	CNS0095605	Slightly white alabastrum(tetraploid) 2	4.448
	CNS0095606	Slightly white alabastrum(tetraploid) 3	10.913
	CNS0095607	Whole white alabastrum(tetraploid) 1	2.927
	CNS0095608	Whole white alabastrum(tetraploid) 2	6.215
	CNS0095609	Whole white alabastrum(tetraploid) 3	5.928
	CNS0095610	Silvery flower (tetraploid) 1	0.516
	CNS0095611	Silvery flower (tetraploid) 2	0.670
	CNS0095612	Silvery flower (tetraploid) 3	1.483
	CNS0095613	Golden flower (tetraploid) 1	0.721
	CNS0095614	Golden flower (tetraploid) 2	0.773
	CNS0095615	Golden flower (tetraploid) 3	0.450
CRA001975	CRR073297	Stem 1	13.696
	CRR073298	Stem 2	11.674
	CRR073299	Stem 3	5.481
	CRR073300	Leaf 1	14.788
	CRR073301	Leaf 2	11.706
	CRR073302	Leaf 3	7.357
	CRR073303	Juvenile bud 1	6.648
	CRR073304	Juvenile bud 2	2.901
	CRR073305	Juvenile bud 3	5.705
	CRR073306	Third green 1	1.088
	CRR073307	Third green 2	0.569
	CRR073308	Third green 3	0.469
	CRR073309	Second white 1	0.295
	CRR073310	Second white 2	0.133
	CRR073311	Second white 3	0.000
	CRR073312	Silver flowering 1	0.239
	CRR073313	Silver flowering 2	0.236
	CRR073314	Silver flowering 3	0.000
	CRR073315	Gold flowering 1	3.257
	CRR073316	Gold flowering 2	1.951
	CRR073317	Gold flowering 3	1.749
	CRR073318	Tawny withering 1	5.989
	CRR073319	Tawny withering 2	0.939
	CRR073320	Tawny withering 3	4.985