Gene detail

Detail information of GWHGAAZE017588

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	KHG09850.1	0	Putative DNA repair RAD23-1 -like protein [Gossypium arboreum]
Swissprot	tr\|Q84L33\|RD23B_ARATH	2E-175	Ubiquitin receptor RAD23b
trEMBL	tr\|A0A068TPN1\|A0A068TPN1_COFCA	0	Coffea canephora DH200=94 genomic scaffold, scaffold_2 {ECO:0000313\|EMBL:CDO98260.1}
TAIR10	AT1G79650.1	3E-118	Rad23 UV excision repair protein family

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000005	gene	8285352	8287699	-
GWHAAZE00000005	mRNA	8285352	8287699	-
GWHAAZE00000005	exon	8285352	8285468	-
GWHAAZE00000005	exon	8285562	8285640	-
GWHAAZE00000005	exon	8285762	8285871	-
GWHAAZE00000005	exon	8285959	8286006	-
GWHAAZE00000005	exon	8286143	8286208	-
GWHAAZE00000005	exon	8286299	8286448	-
GWHAAZE00000005	exon	8286514	8286688	-
GWHAAZE00000005	exon	8287116	8287204	-
GWHAAZE00000005	exon	8287294	8287332	-
GWHAAZE00000005	exon	8287541	8287699	-
GWHAAZE00000005	CDS	8287541	8287699	-
GWHAAZE00000005	CDS	8287294	8287332	-
GWHAAZE00000005	CDS	8287116	8287204	-
GWHAAZE00000005	CDS	8286514	8286688	-
GWHAAZE00000005	CDS	8286299	8286448	-
GWHAAZE00000005	CDS	8286143	8286208	-
GWHAAZE00000005	CDS	8285959	8286006	-
GWHAAZE00000005	CDS	8285762	8285871	-
GWHAAZE00000005	CDS	8285562	8285640	-
GWHAAZE00000005	CDS	8285352	8285468	-

Transcript Sequence
>GWHTAAZE017608 ATGGCAGTTAAGAAAAAAATTGAAGATATACAAGGAAAGGACAATTATCCGTGTGGACAGCAATTACTGATTCACAATGGGAAGGTTTTGAAAGATGAGAGTACCTTGGCAGAGAACAAGGTCAGCGAGGATGGATTTCTTGTTGTCATGCTTAGCAAGAGTAAGACTTTGGGCTCAAGTGGGACATCCTCTTCCCAGCCTTCATCTGCGGTTGCACCAACTTCAAATCCCACTCCTCCACCAACTACCGATCCTTCTTGTGCACCTGAAGCCCCTCCGCCAGTACTTGCTCCTGATACATATGATCAAGCTGCTTCAATTTTAGTTGCTGATAATACTCTTGAGCAGACTATTCAACAATTAATTGATATGGGTGGTGGAATCTGGGATAAGGAAACTGTTACACGGGCACTTCGAGCTGCTTACAACAATCCAGAGCGAGCTGTGGATTACTTATATTCCGGCATACCTGAAACTGCAGAAGTTGCTGTTCCAGTGGCTCAATTCCCTGCAAATCTGGCAAATATTGGGGATAATACAGGAACAGGTGCAGTTGCGTCCGGACCAGTCTCTGGTGTACCTAATTCTTCTCCCTTGAATTTATTTCCCCAGGAAACACTCTCTGGTGCTACTGGTGGTGGTCTTGGATCCCTTGACTTCCTTAGGAACAACCAACAGTTCCAAGCATTGCGTACGATGGTTCAGGCAAATCCACAAATATTACAGCCTATGCTTCAGGAGCTAGGAAAGCAAAACCCTCAACTTTTGAGATTAATCCAGGAGCATCATGCCGAATTTCTTCAATTGATAAATGAACCTGTTGAAGCTTCCGAAGGGGATTTATTTGATCAGCCCGAGCAGGACTTGCCCCATGCTATTAGTGTTACTCCAGCAGAGCAAGAGGCCATTGAGAGACTTGAGGCAATGGGATTTGATAGAGCCCTTGTTATTGAGGCATTTTTAGCCTGTGACCGCAATGAGGAATTAGCAATCAACTACCTATTGGAGAATGCTGGAGATTATGAGGATTGA

Network for GWHGAAZE017588

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00240.24	ubiquitin	3	53	7.70E-09
PF00627.32	UBA	115	152	6.60E-14
PF09280.12	XPC-binding	218	273	7.10E-23
PF00627.32	UBA	299	334	6.60E-12

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K10839	RAD23, HR23	Protein processing in endoplasmic reticulum	map04141
K10839	RAD23, HR23	Nucleotide excision repair	map03420

Gene Ontology

GO term	Ontology	Name
GO:0006289	biological_process	nucleotide-excision repair
GO:0043161	biological_process	proteasome-mediated ubiquitin-dependent protein catabolic process
GO:0005634	cellular_component	nucleus
GO:0003684	molecular_function	damaged DNA binding
GO:0005515	molecular_function	protein binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	60.378
	SRR3591706	second leaf	38.935
	SRR3591707	mature leaf	31.810
	SRR3591708	Shoot apex	68.551
	SRR3591709	Stem	54.127
	SRR3591710	White floral bud	53.670
	SRR3591711	White flower	61.707
	SRR3591712	Green floral bud	55.315
	SRR3591713	Yellow flower	62.722
SRP173429	SRR8316895	Juvenile bud stage	49.913
	SRR8316896	Juvenile bud stage	55.331
	SRR8316897	Juvenile bud stage	31.896
	SRR8316894	Third green stage	18.970
	SRR8316900	Third green stage	52.807
	SRR8316901	Third green stage	49.485
	SRR8316898	Complete white stage	22.396
	SRR8316899	Complete white stage	74.943
	SRR8316903	Complete white stage	35.459
	SRR8316902	Silver flowering stage	23.151
	SRR8316904	Silver flowering stage	29.636
	SRR8316905	Silver flowering stage	13.872
	SRR8316906	Gold flowering stage	44.708
	SRR8316907	Gold flowering stage	44.293
	SRR8316908	Gold flowering stage	54.092
SRP132670	SRR6706286	Control	54.220
	SRR6706287	Light intensity 50%	51.225
	SRR6706288	Light intensity 20%	55.579
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	30.303
	CNS0095593	Slightly white alabastrum(diploid) 2	29.709
	CNS0095594	Slightly white alabastrum(diploid) 3	33.527
	CNS0095595	Whole white alabastrum(diploid) 2	23.645
	CNS0095596	Whole white alabastrum(diploid) 3	24.476
	CNS0095597	Whole white alabastrum(diploid) 4	19.880
	CNS0095598	Silvery flower (diploied) 1	33.390
	CNS0095599	Silvery flower (diploied) 2	25.622
	CNS0095600	Silvery flower (diploied) 3	45.182
	CNS0095601	Golden flower (diploid) 1	28.884
	CNS0095602	Golden flower (diploid) 2	43.445
	CNS0095603	Golden flower (diploid) 3	40.968
	CNS0095604	Slightly white alabastrum(tetraploid) 1	40.325
	CNS0095605	Slightly white alabastrum(tetraploid) 2	32.078
	CNS0095606	Slightly white alabastrum(tetraploid) 3	63.529
	CNS0095607	Whole white alabastrum(tetraploid) 1	25.845
	CNS0095608	Whole white alabastrum(tetraploid) 2	19.115
	CNS0095609	Whole white alabastrum(tetraploid) 3	48.219
	CNS0095610	Silvery flower (tetraploid) 1	51.285
	CNS0095611	Silvery flower (tetraploid) 2	47.517
	CNS0095612	Silvery flower (tetraploid) 3	41.851
	CNS0095613	Golden flower (tetraploid) 1	35.131
	CNS0095614	Golden flower (tetraploid) 2	43.934
	CNS0095615	Golden flower (tetraploid) 3	52.612
CRA001975	CRR073297	Stem 1	66.496
	CRR073298	Stem 2	51.911
	CRR073299	Stem 3	61.752
	CRR073300	Leaf 1	49.886
	CRR073301	Leaf 2	51.470
	CRR073302	Leaf 3	43.170
	CRR073303	Juvenile bud 1	46.787
	CRR073304	Juvenile bud 2	33.580
	CRR073305	Juvenile bud 3	52.996
	CRR073306	Third green 1	15.045
	CRR073307	Third green 2	15.382
	CRR073308	Third green 3	14.866
	CRR073309	Second white 1	21.088
	CRR073310	Second white 2	19.066
	CRR073311	Second white 3	21.039
	CRR073312	Silver flowering 1	24.692
	CRR073313	Silver flowering 2	30.140
	CRR073314	Silver flowering 3	25.511
	CRR073315	Gold flowering 1	10.974
	CRR073316	Gold flowering 2	18.976
	CRR073317	Gold flowering 3	18.892
	CRR073318	Tawny withering 1	37.423
	CRR073319	Tawny withering 2	35.339
	CRR073320	Tawny withering 3	41.460