Gene detail

Detail information of GWHGAAZE017594

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_009622499.1	1.1289E-104	PREDICTED: probable E3 ubiquitin-protein ligase RNF217 [Nicotiana tomentosiformis]
Swissprot	tr\|Q9SKC3\|ARI9_ARATH	5E-15	Probable E3 ubiquitin-protein ligase ARI9
trEMBL	tr\|M1CTP2\|M1CTP2_SOLTU	1E-101	Uncharacterized protein {ECO:0000313\|EnsemblPlants:PGSC0003DMT400074442}
TAIR10	AT3G53690.1	2E-56	RING/U-box superfamily protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000005	gene	8378262	8380474	-
GWHAAZE00000005	mRNA	8378262	8380474	-
GWHAAZE00000005	exon	8378262	8378409	-
GWHAAZE00000005	exon	8379636	8380474	-
GWHAAZE00000005	CDS	8379636	8380474	-
GWHAAZE00000005	CDS	8378262	8378409	-

Transcript Sequence
>GWHTAAZE017614 ATGGCAGAAGAATCTTCAACGATCTCTGTTATTGATATTTACCATCAACCAGCAGCAGATTCAAACGAATACCAAGACGACGATCGCCGTGCCATTGTCATTGATCAGACCTTCAATGATGCCAAATACGCAGAAGAGTTACAGTTCCAAGAAGGCATAATCGCCTCTCTAATCTTTCTCGAAAACCCCAACAATAACACTTCACCCCCACCACTCTCAATCCAAGACACTCCATCATCCTCAAACCCTAACCCGTCCACTGATGCCGATAAATCAATCGCCGAATCATCGGTCAGCTTTTGCGAGATTTGCGTGGAGCAAAAACAAAACAACGAAATGGTTAGGGTTCATAAATGCTCCCACTCTTTTTGCTCCGATTGCATAAGCAAACACGTATCCGTCAAAATCCAAGACAATGTGCACGTTGTGGCCTGTCCTGGTCTGGATTGTGAGGGAGTCCTCCGACTTGAGAATTGCATGTCTGTGATTCCGAAGGAGGTGATTGAACGGTGGGACGAGGCGTTAACGGAGTCCCTAATAATTGATTCTCAGAAATTTTACTGTCCGTTCAAGGACTGTTCGGCGATGTTGATTAAAGATACGGAGGAGGTCATTAGGGAATCGGAGTGTCCGGAGTGCCGGAGATTGTTCTGTGCTCAATGTAGATCGTCGTGGCATTCGGGGATAGAATGTGAGGAGTTTCAGAATCTGAATGCAGATGAAAGAGGGAGGGAGGATTTGATGGTGAGGGAACTTGCTAAGGAAAAGAATTGGAAGAGATGTCCTCAATGCAAATTCTATGTGGAAAAGACTCAGGGTTGTTTACATATGACTTGCAGGAGTAACGAGCGATGGTTAATTGTTGCAGGTGTAAATTTCAGTTTTGCTATGCATGTGGAGCAACATGGACTTCAACTCATGGTGGCTGTCAGAGACCAATCTAATACTGGACTTCAATTCATGGTGGCGGTCAAAAGACCAATCTAA

Network for GWHGAAZE017594

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00097.26	zf-C3HC4	101	137	9.60E-05
PF01485.22	IBR	170	231	1.30E-11

Protein Sequence

Gene family

Gene family	subfamily
Ubiquitin Family	RING
Ubiquitin Family	U-box

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0046872	molecular_function	metal ion binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	22.326
	SRR3591706	second leaf	6.024
	SRR3591707	mature leaf	2.054
	SRR3591708	Shoot apex	9.969
	SRR3591709	Stem	28.774
	SRR3591710	White floral bud	6.118
	SRR3591711	White flower	4.672
	SRR3591712	Green floral bud	9.087
	SRR3591713	Yellow flower	0.565
SRP173429	SRR8316895	Juvenile bud stage	5.363
	SRR8316896	Juvenile bud stage	6.000
	SRR8316897	Juvenile bud stage	3.025
	SRR8316894	Third green stage	3.574
	SRR8316900	Third green stage	10.373
	SRR8316901	Third green stage	6.809
	SRR8316898	Complete white stage	2.227
	SRR8316899	Complete white stage	11.449
	SRR8316903	Complete white stage	2.846
	SRR8316902	Silver flowering stage	0.710
	SRR8316904	Silver flowering stage	1.536
	SRR8316905	Silver flowering stage	0.495
	SRR8316906	Gold flowering stage	1.757
	SRR8316907	Gold flowering stage	2.383
	SRR8316908	Gold flowering stage	0.986
SRP132670	SRR6706286	Control	9.570
	SRR6706287	Light intensity 50%	9.815
	SRR6706288	Light intensity 20%	10.621
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	6.408
	CNS0095593	Slightly white alabastrum(diploid) 2	7.247
	CNS0095594	Slightly white alabastrum(diploid) 3	5.788
	CNS0095595	Whole white alabastrum(diploid) 2	5.200
	CNS0095596	Whole white alabastrum(diploid) 3	6.489
	CNS0095597	Whole white alabastrum(diploid) 4	4.067
	CNS0095598	Silvery flower (diploied) 1	3.607
	CNS0095599	Silvery flower (diploied) 2	3.162
	CNS0095600	Silvery flower (diploied) 3	2.937
	CNS0095601	Golden flower (diploid) 1	2.011
	CNS0095602	Golden flower (diploid) 2	2.985
	CNS0095603	Golden flower (diploid) 3	2.758
	CNS0095604	Slightly white alabastrum(tetraploid) 1	3.912
	CNS0095605	Slightly white alabastrum(tetraploid) 2	5.341
	CNS0095606	Slightly white alabastrum(tetraploid) 3	7.632
	CNS0095607	Whole white alabastrum(tetraploid) 1	3.893
	CNS0095608	Whole white alabastrum(tetraploid) 2	4.974
	CNS0095609	Whole white alabastrum(tetraploid) 3	6.368
	CNS0095610	Silvery flower (tetraploid) 1	2.837
	CNS0095611	Silvery flower (tetraploid) 2	1.983
	CNS0095612	Silvery flower (tetraploid) 3	1.849
	CNS0095613	Golden flower (tetraploid) 1	0.509
	CNS0095614	Golden flower (tetraploid) 2	1.238
	CNS0095615	Golden flower (tetraploid) 3	0.252
CRA001975	CRR073297	Stem 1	7.313
	CRR073298	Stem 2	7.636
	CRR073299	Stem 3	11.406
	CRR073300	Leaf 1	8.270
	CRR073301	Leaf 2	7.578
	CRR073302	Leaf 3	9.480
	CRR073303	Juvenile bud 1	7.604
	CRR073304	Juvenile bud 2	5.606
	CRR073305	Juvenile bud 3	6.544
	CRR073306	Third green 1	1.846
	CRR073307	Third green 2	2.729
	CRR073308	Third green 3	1.311
	CRR073309	Second white 1	1.038
	CRR073310	Second white 2	0.626
	CRR073311	Second white 3	0.199
	CRR073312	Silver flowering 1	0.639
	CRR073313	Silver flowering 2	0.630
	CRR073314	Silver flowering 3	0.623
	CRR073315	Gold flowering 1	3.569
	CRR073316	Gold flowering 2	2.197
	CRR073317	Gold flowering 3	3.495
	CRR073318	Tawny withering 1	14.741
	CRR073319	Tawny withering 2	10.316
	CRR073320	Tawny withering 3	15.674