Detail information of GWHGAAZE017595


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrAGE10594.104-coumarate CoA ligase [Lonicera japonica]
Swissprottr|O24145|4CL1_TOBAC04-coumarate--CoA ligase 1
trEMBLtr|L7Z3F8|L7Z3F8_LONJA04-coumarate CoA ligase {ECO:0000313|EMBL:AGE10594.1}
TAIR10AT3G21240.104-coumarate:CoA ligase 2

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000005gene83959998401209-
GWHAAZE00000005mRNA83959998401209-
GWHAAZE00000005exon84002298401209-
GWHAAZE00000005exon83971038397301-
GWHAAZE00000005exon83966088396821-
GWHAAZE00000005exon83962408396342-
GWHAAZE00000005exon83959998396118-
GWHAAZE00000005CDS84002298401209-
GWHAAZE00000005CDS83971038397301-
GWHAAZE00000005CDS83966088396821-
GWHAAZE00000005CDS83962408396342-
GWHAAZE00000005CDS83959998396118-
Transcript Sequence

Network for GWHGAAZE017595

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00501.29AMP-binding314381.70E-106
PF13193.7AMP-binding_C4475224.20E-16
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K019044CL Metabolic pathways map01100
Biosynthesis of secondary metabolitesmap01110
Ubiquinone and other terpenoid-quinone biosynthesismap00130
Phenylpropanoid biosynthesismap00940

Gene Ontology

GO term OntologyName
GO:0003824molecular_functioncatalytic activity

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf162.273
SRR3591706second leaf108.057
SRR3591707mature leaf135.978
SRR3591708Shoot apex110.658
SRR3591709Stem619.597
SRR3591710White floral bud124.913
SRR3591711White flower216.333
SRR3591712Green floral bud93.586
SRR3591713Yellow flower281.905
SRP173429 SRR8316895Juvenile bud stage 121.739
SRR8316896Juvenile bud stage 113.275
SRR8316897Juvenile bud stage 46.724
SRR8316894Third green stage 40.352
SRR8316900Third green stage 100.270
SRR8316901Third green stage 104.466
SRR8316898Complete white stage 68.867
SRR8316899Complete white stage 132.731
SRR8316903Complete white stage 110.108
SRR8316902Silver flowering stage151.781
SRR8316904Silver flowering stage168.241
SRR8316905Silver flowering stage77.328
SRR8316906Gold flowering stage 321.191
SRR8316907Gold flowering stage 316.934
SRR8316908Gold flowering stage 449.196
SRP132670SRR6706286Control162.240
SRR6706287Light intensity 50%157.447
SRR6706288Light intensity 20%165.487
CNP0000432CNS0095592Slightly white alabastrum(diploid) 185.454
CNS0095593Slightly white alabastrum(diploid) 271.919
CNS0095594Slightly white alabastrum(diploid) 395.866
CNS0095595Whole white alabastrum(diploid) 263.955
CNS0095596Whole white alabastrum(diploid) 341.411
CNS0095597Whole white alabastrum(diploid) 455.565
CNS0095598Silvery flower (diploied) 1103.921
CNS0095599Silvery flower (diploied) 2105.792
CNS0095600Silvery flower (diploied) 3151.716
CNS0095601Golden flower (diploid) 185.946
CNS0095602Golden flower (diploid) 2154.262
CNS0095603Golden flower (diploid) 3148.279
CNS0095604Slightly white alabastrum(tetraploid) 173.996
CNS0095605Slightly white alabastrum(tetraploid) 256.286
CNS0095606Slightly white alabastrum(tetraploid) 3183.498
CNS0095607Whole white alabastrum(tetraploid) 149.770
CNS0095608Whole white alabastrum(tetraploid) 228.533
CNS0095609Whole white alabastrum(tetraploid) 398.358
CNS0095610Silvery flower (tetraploid) 1166.510
CNS0095611Silvery flower (tetraploid) 2110.945
CNS0095612Silvery flower (tetraploid) 3154.173
CNS0095613Golden flower (tetraploid) 1186.460
CNS0095614Golden flower (tetraploid) 2239.581
CNS0095615Golden flower (tetraploid) 3206.051
CRA001975CRR073297Stem 1175.953
CRR073298Stem 2146.193
CRR073299Stem 3163.307
CRR073300Leaf 1124.827
CRR073301Leaf 2127.175
CRR073302Leaf 3123.426
CRR073303Juvenile bud 1105.538
CRR073304Juvenile bud 2106.143
CRR073305Juvenile bud 3139.841
CRR073306Third green 1625.399
CRR073307Third green 2369.539
CRR073308Third green 3445.913
CRR073309Second white 1572.955
CRR073310Second white 2479.029
CRR073311Second white 3576.493
CRR073312Silver flowering 11043.967
CRR073313Silver flowering 21154.354
CRR073314Silver flowering 31083.646
CRR073315Gold flowering 194.481
CRR073316Gold flowering 2117.700
CRR073317Gold flowering 3112.469
CRR073318Tawny withering 1314.271
CRR073319Tawny withering 2283.622
CRR073320Tawny withering 3313.757