Gene detail

Detail information of GWHGAAZE017600

Functional Annotation

Database	Orthologs	Annotation
Nr	CDO98277.1	unnamed protein product [Coffea canephora]
Swissprot	tr\|Q2HXL0\|RBOHC_SOLTU	Respiratory burst oxidase homolog protein C
trEMBL	tr\|K4BLU9\|K4BLU9_SOLLC	Uncharacterized protein {ECO:0000313\|EnsemblPlants:Solyc03g117980.2.1}
TAIR10	AT5G51060.1	NADPH/respiratory burst oxidase protein D

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000005	gene	8488247	8494726	+
GWHAAZE00000005	mRNA	8488247	8494726	+
GWHAAZE00000005	exon	8488247	8488874	+
GWHAAZE00000005	exon	8488986	8489148	+
GWHAAZE00000005	exon	8489238	8489286	+
GWHAAZE00000005	exon	8489469	8489582	+
GWHAAZE00000005	exon	8489744	8490163	+
GWHAAZE00000005	exon	8490425	8490811	+
GWHAAZE00000005	exon	8490917	8491012	+
GWHAAZE00000005	exon	8491124	8491239	+
GWHAAZE00000005	exon	8491405	8491507	+
GWHAAZE00000005	exon	8491692	8491765	+
GWHAAZE00000005	exon	8491948	8492528	+
GWHAAZE00000005	exon	8493800	8494158	+
GWHAAZE00000005	exon	8494641	8494726	+
GWHAAZE00000005	CDS	8488247	8488874	+
GWHAAZE00000005	CDS	8488986	8489148	+
GWHAAZE00000005	CDS	8489238	8489286	+
GWHAAZE00000005	CDS	8489469	8489582	+
GWHAAZE00000005	CDS	8489744	8490163	+
GWHAAZE00000005	CDS	8490425	8490811	+
GWHAAZE00000005	CDS	8490917	8491012	+
GWHAAZE00000005	CDS	8491124	8491239	+
GWHAAZE00000005	CDS	8491405	8491507	+
GWHAAZE00000005	CDS	8491692	8491765	+
GWHAAZE00000005	CDS	8491948	8492528	+
GWHAAZE00000005	CDS	8493800	8493909	+
GWHAAZE00000005	three_prime_UTR	8493910	8494158	+
GWHAAZE00000005	three_prime_UTR	8494641	8494726	+

Transcript Sequence
>GWHTAAZE017620 ATGCAGAACACCGGCGCAGACGACATGAGAGGACTGCCGGAAAATCAAATTCGTCATCACCACCACCACTCCGACACAGAGGTAGGTGGCAGCGACAGGGCTGGGTTCAGCGGTCCGCTTAGCGGTCCTTTAAGCGGACCACTGAACAAACGAGGCGGACGTAAAAGCGCCAGATTCAACCTTCCGGAAAGCACTGCCACGAGTAGCACTGCTAGCAATAACAATGACGATTCTTACGTGGAGATCACCCTCGACGTGCGTGAAGATTCTGTTGCAGTTCACAGCGTGAAAACAGCCGGCGGTGCTGACGTGGAAGACCCCGAGCTGACCTTACTGGCTAAAGGCTTGGAGAAGAGGTCATCGTTCGGCTCTTCTGTGGTCCGTAATGCTTCGTCTAGGATTAGGCAAGTTTCTCAAGAGCTTAAGCGTTTGGCTTCTTTCACAAAACGACCACACCACGGTCGTTTTGATAGGACCAAATCCGCGGCTGCTCATGCTTTGAAGAGTCTCAAATTTATTAGCAAAACCGACGGAGGTGCCGGTTGGGCCGCCGTCGAGAAGAGGTTCAATGACCTCACCGCCACTACTAATGGCTTGCTTCCTCGTTCTCTCTTCGGCGAATGCATCGGGATGAATAAGGAGTCTAAGGAATTTGCCGGAGAGTTATTTGATGCGCTTACTCGAAGGAGGAATATAACAGGGGATTCCATTAATAAGGCAGAATTGAAAGAGTTTTGGGAACAGATCTCCGATCAGAGTTTCGATTCTCGCCTTCAAACTTTCTTTGACATGGTTGATAAAGATGCAGATGGTAGAATCACAGAGGAAGAAGTCAGAGAGATTATTGGCTTAAGTGCATCTGCAAACAAGCTGTCCAATATCCAGAAGCAGGCAGATGAATATGCAGCACTGATTATGGAAGAGTTAGACCCCGACAATCTCGGATACATTATGATTGAAAATTTGGAGATGCTATTGTTGCAAGCTCCAAACCAAACAGTAAGAGGCGAAAGCCGAAACTTGAGCCAAATGCTGAGCCAGAAGCTGAAGACGGTTGATCATAACCCTTTCCGTAGGTGTTACCGAGACTTGAAGTACTTCATACAGGATAACTGGCAAAGAGCTTGGGTTATGGCACTTTGGATAGGAGTTATGGCTGTTCTATTTGCCTGGAAGTATGTGCAGTATAAGAACAGGGCAGCATTTGAAGTAATGGGTCATTGTGTTTGTTTGGCAAAAGGCGCAGCCGAGACTCTTAAATTAAACATGGCACTCATTTTGCTCCCGGTTTGTCGCAACACCATCACATGGCTTCGAAACAAGACCAGATTAGGTGTTGCCGTTCCATTTGATGACAACCTCAATTTCCACAAAGTGATAGCTGTGGCAATTGCTATTGGGGTTGGGATACACGCGATTTCCCATTTAACATGCGATTTTCCCCGCCTACTTACTGCTACTGAGGAGAAATATGAACTAATGGAGCCTTTCTTTGGGGAAGAACAACCTACAAGTTATTGGTTCTTTGTGAAAGGAGTTGAAGGTGTAACTGGGATTGTAATGGTTGTTCTAATGGCTATAGCCTTCACTTTAGCTTCCCCATGGCTAAGGCGAAGTAAACTAAATCTACCGAAATCCCTTAAGAAACTTACTGGATTCAACGCATTTTGGTATTCTCACCACCTCTTTATCATCGTTTACACTCTACTCATTGTCCATGGAATCAAACTATACTTAACCCACGAATGGTACAAGAAAACGACTTGGATGTACTTGGCTGTTCCGATGTTGCTTTATGGCGGTGAAAGATTGACAAGGGCATTCAGATCCAGCATCAAGGCTGTTAAGATACTTAAGGTGGCTGTTTATCCTGGAAATGTGTTGGCACTTCACATGTCAAAGCCTCAAGGGTTTAAATACAAGAGTGGGCAATATATGTTTGTCAATTGTGCTGCTGTTTCCCCATTTGAATGGCACCCATTTTCCATTACTTCTGCCCCTGGAGATGACTACCTGAGCGTTCACATTCGAACTCTTGGTGATTGGACACGACAACTCAAAACCGTATTCTCAAAGGTATGTCAACCACCACCAAATGGGAAGAGCGGACTCCTCAGAGCTGATTTCTTGCAAGGAGAGAACAATCCTAACTTTCCAAGAGTGCTAATTGATGGTCCATATGGAGCACCGGCGCAAGACTACAAAAAATACGACGTAGTTTTGCTTGTGGGGCTCGGAATTGGGGCAACCCCAATGATCAGCATTGTGAAGGACATTGTTAATAACATGAAGGCCATGGAAGAAGCAGAAAGTGCTATAGAGAATGGTGATGGTGCAAGCAGTGGTGAAGAGAGCCCAGTCCCAACTGGGTGTGGTCCTATTACACCAAAGAGGAAAGCTGGTTCAAGTAATGGCAATAACTTTAGAACAAGGAGGGCTTACTTTTATTGGGTTACAAGGGAACAAGGCTCATTTGACTGGTTTAAAGGGGTGATGAATGAAGTTGCTGAAATGGATCATAAGGGAGTTATAGAGATGCATAATTATTGTACAAGTGTTTACGAAGAAGGCGATGCTCGGTCTGCCCTTATTGCCATGCTTCAGTCGCTAAACCATGCTAAAAATGGCGTCGATGTTGTGTCTGGTACGCGTGTCAAGTCTCATTTTGCCAAGCCCAACTGGCGAAATGTGTACAAGCGCATTGCAGTCAATCACAGCAATGAGCGAGTCGGAGTGTTTTATTGTGGAGCACCGGCACTAACAAAAGAGCTAAAACAGCACGCCTTGGATTTCTCTCACAACACCTCAACGAAATTCGAATTTCACAAGGAAAATTTTTGAGAAGACACCGCTCAACTCTAGCCAATTCTCGCATGTACAGAGCTTATCGCCGCTAAAAGTTGATCTCTATATTTGTTTAGTAACATTTGATTATTATTATAATAAAATATATAATGAAGAAGATCTAATCGATACAATTATTGCCACGACACGATGCCGTATCGAACGAGGATTGAGTGGCCTCAGTGGAATCGGTCCAATTCCTACAATGACGAATTGCTTGCATCGATCACTAGAAGTTATATTTTCTTTCTTTCTCTTGTTAAAATTAAAAATAACTTGCAAAAAGGAAGCTTATGGCATCTGCATCACTATTTAAAATTTCAAAGTACGTA

Network for GWHGAAZE017600

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF08414.11	NADPH_Ox	155	256	1.20E-39
PF01794.20	Ferric_reduct	414	571	2.80E-21
PF08022.13	FAD_binding_8	613	730	1.40E-35
PF08030.13	NAD_binding_6	737	927	2.40E-51

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K13447	RBOH	MAPK signaling pathway - plant	map04016
K13447	RBOH	Plant-pathogen interaction	map04626

Gene Ontology

GO term	Ontology	Name
GO:0055114	biological_process	oxidation-reduction process
GO:0016020	cellular_component	membrane
GO:0016491	molecular_function	oxidoreductase activity
GO:0005509	molecular_function	calcium ion binding
GO:0004601	molecular_function	peroxidase activity
GO:0050664	molecular_function	oxidoreductase activity, acting on NAD(P)H, oxygen as acceptor

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	16.549
	SRR3591706	second leaf	13.774
	SRR3591707	mature leaf	19.363
	SRR3591708	Shoot apex	10.113
	SRR3591709	Stem	17.032
	SRR3591710	White floral bud	7.323
	SRR3591711	White flower	16.661
	SRR3591712	Green floral bud	1.694
	SRR3591713	Yellow flower	19.796
SRP173429	SRR8316895	Juvenile bud stage	8.867
	SRR8316896	Juvenile bud stage	6.016
	SRR8316897	Juvenile bud stage	5.061
	SRR8316894	Third green stage	1.561
	SRR8316900	Third green stage	1.219
	SRR8316901	Third green stage	1.707
	SRR8316898	Complete white stage	1.376
	SRR8316899	Complete white stage	4.303
	SRR8316903	Complete white stage	3.947
	SRR8316902	Silver flowering stage	10.148
	SRR8316904	Silver flowering stage	15.061
	SRR8316905	Silver flowering stage	8.251
	SRR8316906	Gold flowering stage	61.280
	SRR8316907	Gold flowering stage	52.771
	SRR8316908	Gold flowering stage	86.662
SRP132670	SRR6706286	Control	4.001
	SRR6706287	Light intensity 50%	3.826
	SRR6706288	Light intensity 20%	1.830
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	5.581
	CNS0095593	Slightly white alabastrum(diploid) 2	5.090
	CNS0095594	Slightly white alabastrum(diploid) 3	8.267
	CNS0095595	Whole white alabastrum(diploid) 2	3.979
	CNS0095596	Whole white alabastrum(diploid) 3	0.875
	CNS0095597	Whole white alabastrum(diploid) 4	4.187
	CNS0095598	Silvery flower (diploied) 1	27.131
	CNS0095599	Silvery flower (diploied) 2	22.180
	CNS0095600	Silvery flower (diploied) 3	15.187
	CNS0095601	Golden flower (diploid) 1	38.703
	CNS0095602	Golden flower (diploid) 2	42.705
	CNS0095603	Golden flower (diploid) 3	41.562
	CNS0095604	Slightly white alabastrum(tetraploid) 1	1.486
	CNS0095605	Slightly white alabastrum(tetraploid) 2	1.191
	CNS0095606	Slightly white alabastrum(tetraploid) 3	3.478
	CNS0095607	Whole white alabastrum(tetraploid) 1	1.703
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.429
	CNS0095609	Whole white alabastrum(tetraploid) 3	0.615
	CNS0095610	Silvery flower (tetraploid) 1	5.539
	CNS0095611	Silvery flower (tetraploid) 2	3.722
	CNS0095612	Silvery flower (tetraploid) 3	5.094
	CNS0095613	Golden flower (tetraploid) 1	8.722
	CNS0095614	Golden flower (tetraploid) 2	16.290
	CNS0095615	Golden flower (tetraploid) 3	5.229
CRA001975	CRR073297	Stem 1	6.120
	CRR073298	Stem 2	4.165
	CRR073299	Stem 3	5.710
	CRR073300	Leaf 1	1.379
	CRR073301	Leaf 2	1.567
	CRR073302	Leaf 3	1.148
	CRR073303	Juvenile bud 1	0.683
	CRR073304	Juvenile bud 2	1.495
	CRR073305	Juvenile bud 3	1.315
	CRR073306	Third green 1	41.543
	CRR073307	Third green 2	22.569
	CRR073308	Third green 3	36.030
	CRR073309	Second white 1	41.665
	CRR073310	Second white 2	52.889
	CRR073311	Second white 3	64.271
	CRR073312	Silver flowering 1	134.782
	CRR073313	Silver flowering 2	125.407
	CRR073314	Silver flowering 3	118.077
	CRR073315	Gold flowering 1	7.713
	CRR073316	Gold flowering 2	17.790
	CRR073317	Gold flowering 3	13.818
	CRR073318	Tawny withering 1	45.898
	CRR073319	Tawny withering 2	68.090
	CRR073320	Tawny withering 3	36.264